JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DDX60L_chr4_168351735_168485492	0/0	a0025	1706	2	0	2	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0026	1706	2	0	1	0	1	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0027	1706	2	2	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0028	1706	2	2	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0029	1706	2	2	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0030	1706	2	1	1	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0031	1706	2	0	2	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0032	1706	1	0	0	0	1	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0033	1706	1	0	1	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0034	1706	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0035	1706	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0036	1706	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0037	1706	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0038	1706	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0039	1706	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0040	1706	1	0	0	0	0	1	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0041	1706	1	0	0	0	1	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0042	1706	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	1/0	a0043	1706	1	0	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0044	1706	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0045	1706	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0046	1706	1	0	1	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0047	1706	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0048	1706	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0049	1706	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0050	1706	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0051	1706	1	0	0	0	0	1	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0052	1706	1	0	1	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0053	1706	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0054	1706	1	0	1	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	a0055	1706	1	0	0	1	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60_chr4_168211294_168323752	1/1	a0001	1712	200	58	43	57	9	31	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	a0002	1712	29	7	5	17	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	a0003	1712	11	7	3	0	1	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	a0004	1712	8	0	4	0	1	3	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	a0005	1712	4	4	0	0	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	a0006	1712	3	3	0	0	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	a0007	1712	2	0	1	1	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	a0008	1712	2	2	0	0	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	a0009	1712	1	0	0	1	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	a0010	1712	1	1	0	0	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	a0011	1712	1	1	0	0	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	a0012	1712	1	1	0	0	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	a0013	1712	1	1	0	0	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	a0014	1712	1	0	0	1	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	a0015	1712	1	0	0	1	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	a0016	1712	1	1	0	0	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	a0017	1712	1	0	0	1	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	a0018	1712	1	0	0	1	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	a0019	1712	1	0	0	0	1	0	copy fasta	DDX60	chr4	168211294	168323752