JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DDX6_chr11_118742763_118796164	1/1	a0001	483	365	88	67	154	12	42	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	a0002	483	3	0	0	3	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	a0003	483	1	0	0	1	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	a0004	483	1	0	1	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DEAF1_chr11_639233_700222	1/0	a0001	565	335	89	67	129	7	42	copy fasta	DEAF1	chr11	639233	700222
DEAF1_chr11_639233_700222	0/0	a0002	565	6	0	0	6	0	0	copy fasta	DEAF1	chr11	639233	700222
DEAF1_chr11_639233_700222	0/0	a0003	565	2	0	1	0	1	0	copy fasta	DEAF1	chr11	639233	700222
DEAF1_chr11_639233_700222	0/0	a0004	565	1	1	0	0	0	0	copy fasta	DEAF1	chr11	639233	700222
DEAF1_chr11_639233_700222	0/0	a0005	565	1	0	0	1	0	0	copy fasta	DEAF1	chr11	639233	700222
DECR1_chr8_89996477_90058633	1/1	a0001	335	375	86	64	169	14	40	copy fasta	DECR1	chr8	89996477	90058633
DECR1_chr8_89996477_90058633	0/0	a0002	335	2	0	0	0	0	2	copy fasta	DECR1	chr8	89996477	90058633
DECR1_chr8_89996477_90058633	0/0	a0003	335	1	0	0	1	0	0	copy fasta	DECR1	chr8	89996477	90058633
DECR2_chr16_396885_417482	0/1	a0001	292	321	65	71	131	14	39	copy fasta	DECR2	chr16	396885	417482
DECR2_chr16_396885_417482	0/0	a0002	148	27	19	1	7	0	0	copy fasta	DECR2	chr16	396885	417482
DECR2_chr16_396885_417482	0/0	a0003	292	10	0	0	9	0	1	copy fasta	DECR2	chr16	396885	417482
DECR2_chr16_396885_417482	0/0	a0004	292	3	3	0	0	0	0	copy fasta	DECR2	chr16	396885	417482
DECR2_chr16_396885_417482	0/0	a0005	292	1	0	0	1	0	0	copy fasta	DECR2	chr16	396885	417482
DECR2_chr16_396885_417482	0/0	a0006	292	1	1	0	0	0	0	copy fasta	DECR2	chr16	396885	417482
DECR2_chr16_396885_417482	0/0	a0007	292	1	0	1	0	0	0	copy fasta	DECR2	chr16	396885	417482
DECR2_chr16_396885_417482	0/0	a0008	292	1	0	0	1	0	0	copy fasta	DECR2	chr16	396885	417482
DECR2_chr16_396885_417482	0/0	a0009	292	1	0	1	0	0	0	copy fasta	DECR2	chr16	396885	417482
DECR2_chr16_396885_417482	0/0	a0010	292	1	0	0	1	0	0	copy fasta	DECR2	chr16	396885	417482
DEDD2_chr19_42193598_42222677	1/1	a0001	326	249	76	47	72	12	40	copy fasta	DEDD2	chr19	42193598	42222677
DEDD2_chr19_42193598_42222677	0/0	a0002	326	3	2	1	0	0	0	copy fasta	DEDD2	chr19	42193598	42222677
DEDD_chr1_161115974_161137667	1/1	a0001	318	337	67	58	168	16	26	copy fasta	DEDD	chr1	161115974	161137667
DEDD_chr1_161115974_161137667	0/0	a0002	318	1	1	0	0	0	0	copy fasta	DEDD	chr1	161115974	161137667
DEF6_chr6_35292818_35326771	0/0	a0001	631	273	57	40	140	7	29	copy fasta	DEF6	chr6	35292818	35326771
DEF6_chr6_35292818_35326771	1/1	a0002	631	32	12	12	0	2	4	copy fasta	DEF6	chr6	35292818	35326771
DEF6_chr6_35292818_35326771	0/0	a0003	631	11	11	0	0	0	0	copy fasta	DEF6	chr6	35292818	35326771
DEF6_chr6_35292818_35326771	0/0	a0004	631	4	4	0	0	0	0	copy fasta	DEF6	chr6	35292818	35326771
DEF6_chr6_35292818_35326771	0/0	a0005	631	2	0	1	0	1	0	copy fasta	DEF6	chr6	35292818	35326771
DEF6_chr6_35292818_35326771	0/0	a0006	631	1	0	0	0	0	1	copy fasta	DEF6	chr6	35292818	35326771
DEF6_chr6_35292818_35326771	0/0	a0007	631	1	0	1	0	0	0	copy fasta	DEF6	chr6	35292818	35326771
DEF6_chr6_35292818_35326771	0/0	a0008	631	1	0	0	1	0	0	copy fasta	DEF6	chr6	35292818	35326771
DEF6_chr6_35292818_35326771	0/0	a0009	631	1	0	0	1	0	0	copy fasta	DEF6	chr6	35292818	35326771
DEF8_chr16_89943755_89973060	1/1	a0001	451	377	88	74	148	18	47	copy fasta	DEF8	chr16	89943755	89973060
DEF8_chr16_89943755_89973060	0/0	a0002	451	12	12	0	0	0	0	copy fasta	DEF8	chr16	89943755	89973060
DEF8_chr16_89943755_89973060	0/0	a0003	451	2	0	0	2	0	0	copy fasta	DEF8	chr16	89943755	89973060
DEF8_chr16_89943755_89973060	0/0	a0004	268	1	0	0	0	0	1	copy fasta	DEF8	chr16	89943755	89973060
DEFA1B_chr8_6991766_7004198	0/0	a0000	0	7	3	1	2	1	0	copy fasta	DEFA1B	chr8	6991766	7004198
DEFA1B_chr8_6991766_7004198	0/0	a0001	94	355	83	59	157	14	42	copy fasta	DEFA1B	chr8	6991766	7004198
DEFA1B_chr8_6991766_7004198	0/0	a0002	94	30	9	10	6	1	4	copy fasta	DEFA1B	chr8	6991766	7004198
DEFA1B_chr8_6991766_7004198	0/0	a0003	94	5	0	0	5	0	0	copy fasta	DEFA1B	chr8	6991766	7004198
DEFA1B_chr8_6991766_7004198	0/0	a0004	94	1	1	0	0	0	0	copy fasta	DEFA1B	chr8	6991766	7004198
DEFA1_chr8_6972649_6985092	0/0	a0001	94	280	52	50	143	10	25	copy fasta	DEFA1	chr8	6972649	6985092
DEFA1_chr8_6972649_6985092	0/0	a0002	94	126	36	21	46	8	15	copy fasta	DEFA1	chr8	6972649	6985092
DEFA1_chr8_6972649_6985092	0/0	a0003	94	1	0	1	0	0	0	copy fasta	DEFA1	chr8	6972649	6985092
DEFA1_chr8_6972649_6985092	0/0	a0004	94	1	0	0	1	0	0	copy fasta	DEFA1	chr8	6972649	6985092
DEFA3_chr8_7010869_7023297	0/0	a0001	94	274	54	48	127	12	33	copy fasta	DEFA3	chr8	7010869	7023297
DEFA3_chr8_7010869_7023297	0/0	a0002	94	127	9	31	69	5	13	copy fasta	DEFA3	chr8	7010869	7023297