JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DEFA3_chr8_7010869_7023297	0/0	a0003	94	20	20	0	0	0	0	copy fasta	DEFA3	chr8	7010869	7023297
DEFA3_chr8_7010869_7023297	0/0	a0004	94	4	0	0	4	0	0	copy fasta	DEFA3	chr8	7010869	7023297
DEFA3_chr8_7010869_7023297	0/0	a0005	94	3	0	2	0	1	0	copy fasta	DEFA3	chr8	7010869	7023297
DEFA3_chr8_7010869_7023297	0/0	a0006	94	1	0	1	0	0	0	copy fasta	DEFA3	chr8	7010869	7023297
DEFA3_chr8_7010869_7023297	0/0	a0007	94	1	1	0	0	0	0	copy fasta	DEFA3	chr8	7010869	7023297
DEFA4_chr8_6930820_6943306	0/0	a0000	0	1	0	0	0	1	0	copy fasta	DEFA4	chr8	6930820	6943306
DEFA4_chr8_6930820_6943306	1/1	a0001	97	458	95	81	219	15	46	copy fasta	DEFA4	chr8	6930820	6943306
DEFA4_chr8_6930820_6943306	0/0	a0002	97	22	4	0	18	0	0	copy fasta	DEFA4	chr8	6930820	6943306
DEFA4_chr8_6930820_6943306	0/0	a0003	97	3	1	0	0	0	2	copy fasta	DEFA4	chr8	6930820	6943306
DEFA4_chr8_6930820_6943306	0/0	a0004	97	1	0	1	0	0	0	copy fasta	DEFA4	chr8	6930820	6943306
DEFA4_chr8_6930820_6943306	0/0	a0005	97	1	0	0	1	0	0	copy fasta	DEFA4	chr8	6930820	6943306
DEFA5_chr8_7050304_7061739	1/1	a0001	94	470	96	75	232	18	47	copy fasta	DEFA5	chr8	7050304	7061739
DEFA5_chr8_7050304_7061739	0/0	a0002	94	1	0	0	0	0	1	copy fasta	DEFA5	chr8	7050304	7061739
DEFA5_chr8_7050304_7061739	0/0	a0003	94	1	0	1	0	0	0	copy fasta	DEFA5	chr8	7050304	7061739
DEFA6_chr8_6919697_6931076	1/1	a0001	100	443	74	81	226	16	44	copy fasta	DEFA6	chr8	6919697	6931076
DEFA6_chr8_6919697_6931076	0/0	a0002	100	19	15	0	0	0	4	copy fasta	DEFA6	chr8	6919697	6931076
DEFA6_chr8_6919697_6931076	0/0	a0003	100	5	5	0	0	0	0	copy fasta	DEFA6	chr8	6919697	6931076
DEFA6_chr8_6919697_6931076	0/0	a0004	100	5	4	1	0	0	0	copy fasta	DEFA6	chr8	6919697	6931076
DEFB103A_chr8_7876392_7887663	0/0	a0001	67	168	27	28	90	8	15	copy fasta	DEFB103A	chr8	7876392	7887663
DEFB103A_chr8_7876392_7887663	0/0	a0002	67	1	0	0	0	0	1	copy fasta	DEFB103A	chr8	7876392	7887663
DEFB103A_chr8_7876392_7887663	0/0	a0003	67	1	1	0	0	0	0	copy fasta	DEFB103A	chr8	7876392	7887663
DEFB103B_chr8_7423888_7435348	0/0	a0001	67	171	25	34	90	4	18	copy fasta	DEFB103B	chr8	7423888	7435348
DEFB103B_chr8_7423888_7435348	0/0	a0002	67	4	0	0	4	0	0	copy fasta	DEFB103B	chr8	7423888	7435348
DEFB103B_chr8_7423888_7435348	0/0	a0003	67	1	1	0	0	0	0	copy fasta	DEFB103B	chr8	7423888	7435348
DEFB104A_chr8_7831436_7846242	0/0	a0001	72	61	24	10	20	1	6	copy fasta	DEFB104A	chr8	7831436	7846242
DEFB104A_chr8_7831436_7846242	0/0	a0002	72	61	2	20	30	2	7	copy fasta	DEFB104A	chr8	7831436	7846242
DEFB104A_chr8_7831436_7846242	0/0	a0003	72	19	0	4	13	0	2	copy fasta	DEFB104A	chr8	7831436	7846242
DEFB104A_chr8_7831436_7846242	0/0	a0004	72	5	1	2	0	1	1	copy fasta	DEFB104A	chr8	7831436	7846242
DEFB104A_chr8_7831436_7846242	0/0	a0005	72	1	1	0	0	0	0	copy fasta	DEFB104A	chr8	7831436	7846242
DEFB104A_chr8_7831436_7846242	0/0	a0006	72	1	0	0	1	0	0	copy fasta	DEFB104A	chr8	7831436	7846242
DEFB104B_chr8_7465308_7480082	0/0	a0001	72	167	30	24	83	9	21	copy fasta	DEFB104B	chr8	7465308	7480082
DEFB104B_chr8_7465308_7480082	0/0	a0002	72	22	0	8	9	1	4	copy fasta	DEFB104B	chr8	7465308	7480082
DEFB104B_chr8_7465308_7480082	0/0	a0003	72	7	0	2	4	0	1	copy fasta	DEFB104B	chr8	7465308	7480082
DEFB105A_chr8_7816004_7828880	0/0	a0001	78	122	23	23	61	5	10	copy fasta	DEFB105A	chr8	7816004	7828880
DEFB105A_chr8_7816004_7828880	0/0	a0002	78	13	1	2	9	1	0	copy fasta	DEFB105A	chr8	7816004	7828880
DEFB105A_chr8_7816004_7828880	0/0	a0003	78	7	0	1	6	0	0	copy fasta	DEFB105A	chr8	7816004	7828880
DEFB105A_chr8_7816004_7828880	0/0	a0004	78	2	2	0	0	0	0	copy fasta	DEFB105A	chr8	7816004	7828880
DEFB105A_chr8_7816004_7828880	0/0	a0005	78	1	0	1	0	0	0	copy fasta	DEFB105A	chr8	7816004	7828880
DEFB105A_chr8_7816004_7828880	0/0	a0006	78	1	0	1	0	0	0	copy fasta	DEFB105A	chr8	7816004	7828880
DEFB105B_chr8_7482679_7494593	0/0	a0001	78	128	33	16	63	0	16	copy fasta	DEFB105B	chr8	7482679	7494593
DEFB105B_chr8_7482679_7494593	0/0	a0002	78	6	0	0	6	0	0	copy fasta	DEFB105B	chr8	7482679	7494593
DEFB105B_chr8_7482679_7494593	0/0	a0003	78	1	0	0	1	0	0	copy fasta	DEFB105B	chr8	7482679	7494593
DEFB105B_chr8_7482679_7494593	0/0	a0004	78	1	1	0	0	0	0	copy fasta	DEFB105B	chr8	7482679	7494593
DEFB106A_chr8_7820139_7834053	0/0	a0001	65	160	42	32	60	12	14	copy fasta	DEFB106A	chr8	7820139	7834053
DEFB106B_chr8_7477504_7491400	0/0	a0001	65	177	31	26	86	6	28	copy fasta	DEFB106B	chr8	7477504	7491400
DEFB106B_chr8_7477504_7491400	0/0	a0002	65	2	0	0	2	0	0	copy fasta	DEFB106B	chr8	7477504	7491400
DEFB106B_chr8_7477504_7491400	0/0	a0003	65	1	1	0	0	0	0	copy fasta	DEFB106B	chr8	7477504	7491400
DEFB107A_chr8_7806720_7820716	0/0	a0001	70	126	28	18	67	7	6	copy fasta	DEFB107A	chr8	7806720	7820716
DEFB107A_chr8_7806720_7820716	0/0	a0002	70	44	10	10	19	1	4	copy fasta	DEFB107A	chr8	7806720	7820716
DEFB107B_chr8_7490911_7514311	0/0	a0001	70	8	8	0	0	0	0	copy fasta	DEFB107B	chr8	7490911	7514311