JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DEFB108B_chr11_71828200_71842710	1/1	a0001	73	232	31	39	131	7	22	copy fasta	DEFB108B	chr11	71828200	71842710
DEFB108B_chr11_71828200_71842710	0/0	a0002	73	89	25	11	47	1	5	copy fasta	DEFB108B	chr11	71828200	71842710
DEFB108B_chr11_71828200_71842710	0/0	a0003	73	82	3	26	38	2	13	copy fasta	DEFB108B	chr11	71828200	71842710
DEFB108B_chr11_71828200_71842710	0/0	a0004	73	32	32	0	0	0	0	copy fasta	DEFB108B	chr11	71828200	71842710
DEFB108B_chr11_71828200_71842710	0/0	a0005	73	3	3	0	0	0	0	copy fasta	DEFB108B	chr11	71828200	71842710
DEFB108B_chr11_71828200_71842710	0/0	a0006	73	1	1	0	0	0	0	copy fasta	DEFB108B	chr11	71828200	71842710
DEFB108B_chr11_71828200_71842710	0/0	a0007	73	1	1	0	0	0	0	copy fasta	DEFB108B	chr11	71828200	71842710
DEFB109B_chr8_7307722_7325096	0/1	a0001	87	358	51	67	182	16	41	copy fasta	DEFB109B	chr8	7307722	7325096
DEFB109B_chr8_7307722_7325096	0/0	a0002	87	12	0	0	12	0	0	copy fasta	DEFB109B	chr8	7307722	7325096
DEFB109B_chr8_7307722_7325096	0/0	a0003	87	4	0	4	0	0	0	copy fasta	DEFB109B	chr8	7307722	7325096
DEFB109B_chr8_7307722_7325096	0/0	a0004	13	2	0	1	0	0	1	copy fasta	DEFB109B	chr8	7307722	7325096
DEFB109B_chr8_7307722_7325096	0/0	a0005	87	1	1	0	0	0	0	copy fasta	DEFB109B	chr8	7307722	7325096
DEFB110_chr6_50013843_50026994	1/1	a0001	67	386	90	68	172	18	36	copy fasta	DEFB110	chr6	50013843	50026994
DEFB112_chr6_50037099_50054929	1/1	a0001	94	324	83	66	124	14	35	copy fasta	DEFB112	chr6	50037099	50054929
DEFB112_chr6_50037099_50054929	0/0	a0002	94	5	5	0	0	0	0	copy fasta	DEFB112	chr6	50037099	50054929
DEFB112_chr6_50037099_50054929	0/0	a0003	94	3	0	0	0	0	3	copy fasta	DEFB112	chr6	50037099	50054929
DEFB113_chr6_49963677_49974625	1/1	a0001	82	388	92	70	170	16	38	copy fasta	DEFB113	chr6	49963677	49974625
DEFB114_chr6_49955249_49969164	1/1	a0001	69	400	94	70	182	18	34	copy fasta	DEFB114	chr6	49955249	49969164
DEFB115_chr20_31252664_31264632	1/1	a0001	88	436	96	84	194	18	42	copy fasta	DEFB115	chr20	31252664	31264632
DEFB116_chr20_31298212_31313585	1/1	a0001	102	378	69	73	174	18	42	copy fasta	DEFB116	chr20	31298212	31313585
DEFB116_chr20_31298212_31313585	0/0	a0002	102	30	27	3	0	0	0	copy fasta	DEFB116	chr20	31298212	31313585
DEFB116_chr20_31298212_31313585	0/0	a0003	102	4	0	0	4	0	0	copy fasta	DEFB116	chr20	31298212	31313585
DEFB116_chr20_31298212_31313585	0/0	a0004	102	4	0	4	0	0	0	copy fasta	DEFB116	chr20	31298212	31313585
DEFB118_chr20_31363601_31378923	1/1	a0001	123	360	79	76	147	18	38	copy fasta	DEFB118	chr20	31363601	31378923
DEFB118_chr20_31363601_31378923	0/0	a0002	123	15	14	1	0	0	0	copy fasta	DEFB118	chr20	31363601	31378923
DEFB118_chr20_31363601_31378923	0/0	a0003	123	1	1	0	0	0	0	copy fasta	DEFB118	chr20	31363601	31378923
DEFB118_chr20_31363601_31378923	0/0	a0004	123	1	0	1	0	0	0	copy fasta	DEFB118	chr20	31363601	31378923
DEFB118_chr20_31363601_31378923	0/0	a0005	123	1	0	0	1	0	0	copy fasta	DEFB118	chr20	31363601	31378923
DEFB119_chr20_31372164_31395590	1/1	a0001	84	370	92	80	140	16	40	copy fasta	DEFB119	chr20	31372164	31395590
DEFB121_chr20_31399845_31411215	1/1	a0001	76	371	91	80	142	16	40	copy fasta	DEFB121	chr20	31399845	31411215
DEFB121_chr20_31399845_31411215	0/0	a0002	76	1	1	0	0	0	0	copy fasta	DEFB121	chr20	31399845	31411215
DEFB123_chr20_31435632_31455257	1/1	a0001	67	372	90	78	154	14	34	copy fasta	DEFB123	chr20	31435632	31455257
DEFB124_chr20_31460471_31480127	1/1	a0001	71	356	86	76	132	16	44	copy fasta	DEFB124	chr20	31460471	31480127
DEFB124_chr20_31460471_31480127	0/0	a0002	71	3	3	0	0	0	0	copy fasta	DEFB124	chr20	31460471	31480127
DEFB124_chr20_31460471_31480127	0/0	a0003	71	3	3	0	0	0	0	copy fasta	DEFB124	chr20	31460471	31480127
DEFB125_chr20_82672_102094	1/1	a0001	156	471	92	80	237	14	46	copy fasta	DEFB125	chr20	82672	102094
DEFB125_chr20_82672_102094	0/0	a0002	156	1	0	0	1	0	0	copy fasta	DEFB125	chr20	82672	102094
DEFB126_chr20_137590_150751	0/0	a0000	0	171	19	28	96	6	22	copy fasta	DEFB126	chr20	137590	150751
DEFB126_chr20_137590_150751	1/0	a0001	111	215	41	37	113	9	14	copy fasta	DEFB126	chr20	137590	150751
DEFB126_chr20_137590_150751	0/1	a0002	81	62	20	9	19	3	10	copy fasta	DEFB126	chr20	137590	150751
DEFB126_chr20_137590_150751	0/0	a0003	111	10	8	0	0	0	2	copy fasta	DEFB126	chr20	137590	150751
DEFB126_chr20_137590_150751	0/0	a0004	111	2	2	0	0	0	0	copy fasta	DEFB126	chr20	137590	150751
DEFB127_chr20_152454_164163	1/1	a0001	99	288	85	49	119	9	24	copy fasta	DEFB127	chr20	152454	164163
DEFB127_chr20_152454_164163	0/0	a0002	99	160	4	27	104	5	20	copy fasta	DEFB127	chr20	152454	164163
DEFB127_chr20_152454_164163	0/0	a0003	51	1	0	0	1	0	0	copy fasta	DEFB127	chr20	152454	164163
DEFB127_chr20_152454_164163	0/0	a0004	99	1	1	0	0	0	0	copy fasta	DEFB127	chr20	152454	164163
DEFB128_chr20_182853_194711	0/1	a0001	93	257	64	40	123	8	21	copy fasta	DEFB128	chr20	182853	194711
DEFB128_chr20_182853_194711	1/0	a0002	93	201	18	39	110	6	27	copy fasta	DEFB128	chr20	182853	194711
DEFB128_chr20_182853_194711	0/0	a0003	93	8	8	0	0	0	0	copy fasta	DEFB128	chr20	182853	194711
DEFB128_chr20_182853_194711	0/0	a0004	3	3	2	1	0	0	0	copy fasta	DEFB128	chr20	182853	194711