Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ADGRA3_chr4_22382376_22521066	0/0	a0008	1321	3	0	1	0	0	2	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	a0009	1321	2	1	0	0	0	1	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	a0010	1321	2	0	0	0	1	1	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	a0011	1321	1	0	0	1	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	a0012	1321	1	1	0	0	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	a0013	1321	1	1	0	0	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	a0014	1321	1	0	0	1	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	a0015	1321	1	0	0	1	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	a0016	1321	1	0	0	1	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	a0017	1321	1	1	0	0	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	a0018	1321	1	1	0	0	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	a0019	1321	1	1	0	0	0	0	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRA3_chr4_22382376_22521066	0/0	a0020	1321	1	0	0	0	0	1	copy fasta	ADGRA3	chr4	22382376	22521066
ADGRB1_chr8_142444649_142550007	1/1	a0001	1584	283	77	71	95	13	25	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	a0002	1584	10	0	0	10	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	a0003	1584	6	6	0	0	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	a0004	1584	2	0	0	2	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	a0005	1584	1	0	0	1	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	a0006	584	1	0	0	0	0	1	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	a0007	1584	1	0	0	1	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	a0008	1584	1	0	0	0	0	1	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	a0009	1584	1	0	0	1	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	a0010	1584	1	0	0	0	1	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	a0011	1584	1	0	1	0	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	a0012	1584	1	1	0	0	0	0	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB1_chr8_142444649_142550007	0/0	a0013	1584	1	0	0	0	0	1	copy fasta	ADGRB1	chr8	142444649	142550007
ADGRB2_chr1_31722117_31769340	1/1	a0001	1585	242	74	40	82	14	30	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	a0002	1585	9	8	1	0	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	a0003	1585	8	0	7	1	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	a0004	1585	7	0	0	7	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	a0005	1585	3	3	0	0	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	a0006	1585	2	2	0	0	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	a0007	1585	1	0	1	0	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	a0008	1585	1	0	0	1	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	a0009	1585	1	0	1	0	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	a0010	1585	1	0	0	1	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	a0011	1585	1	0	1	0	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	a0012	1585	1	1	0	0	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	a0013	1585	1	1	0	0	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	a0014	1585	1	1	0	0	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB2_chr1_31722117_31769340	0/0	a0015	1585	1	0	1	0	0	0	copy fasta	ADGRB2	chr1	31722117	31769340
ADGRB3_chr6_68630282_69394506	0/1	a0001	1522	106	56	20	7	8	14	copy fasta	ADGRB3	chr6	68630282	69394506
ADGRB3_chr6_68630282_69394506	1/0	a0002	1522	12	3	5	3	0	0	copy fasta	ADGRB3	chr6	68630282	69394506
ADGRB3_chr6_68630282_69394506	0/0	a0003	1522	1	1	0	0	0	0	copy fasta	ADGRB3	chr6	68630282	69394506
ADGRB3_chr6_68630282_69394506	0/0	a0004	1522	1	0	1	0	0	0	copy fasta	ADGRB3	chr6	68630282	69394506
ADGRD1_chr12_130948907_131146469	1/0	a0001	874	214	56	53	62	12	30	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	a0002	874	7	7	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	a0003	874	7	7	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	a0004	874	4	0	4	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	a0005	874	3	0	2	0	1	0	copy fasta	ADGRD1	chr12	130948907	131146469