JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DEFB128_chr20_182853_194711	0/0	a0005	93	1	0	0	1	0	0	copy fasta	DEFB128	chr20	182853	194711
DEFB129_chr20_222258_234886	1/1	a0001	183	308	45	61	154	17	29	copy fasta	DEFB129	chr20	222258	234886
DEFB129_chr20_222258_234886	0/0	a0002	183	112	46	12	46	1	7	copy fasta	DEFB129	chr20	222258	234886
DEFB129_chr20_222258_234886	0/0	a0003	183	17	0	0	17	0	0	copy fasta	DEFB129	chr20	222258	234886
DEFB129_chr20_222258_234886	0/0	a0004	183	9	8	1	0	0	0	copy fasta	DEFB129	chr20	222258	234886
DEFB129_chr20_222258_234886	0/0	a0005	183	1	0	0	1	0	0	copy fasta	DEFB129	chr20	222258	234886
DEFB129_chr20_222258_234886	0/0	a0006	183	1	0	0	1	0	0	copy fasta	DEFB129	chr20	222258	234886
DEFB129_chr20_222258_234886	0/0	a0007	183	1	0	0	1	0	0	copy fasta	DEFB129	chr20	222258	234886
DEFB129_chr20_222258_234886	0/0	a0008	183	1	1	0	0	0	0	copy fasta	DEFB129	chr20	222258	234886
DEFB130A_chr8_12305962_12323316	0/0	a0001	79	335	58	56	167	12	42	copy fasta	DEFB130A	chr8	12305962	12323316
DEFB130A_chr8_12305962_12323316	0/0	a0002	79	2	2	0	0	0	0	copy fasta	DEFB130A	chr8	12305962	12323316
DEFB130A_chr8_12305962_12323316	0/0	a0003	79	1	0	0	1	0	0	copy fasta	DEFB130A	chr8	12305962	12323316
DEFB130B_chr8_12059389_12076747	0/0	a0001	79	2	2	0	0	0	0	copy fasta	DEFB130B	chr8	12059389	12076747
DEFB131A_chr4_9439414_9455666	1/1	a0001	70	412	70	80	196	16	48	copy fasta	DEFB131A	chr4	9439414	9455666
DEFB131A_chr4_9439414_9455666	0/0	a0002	70	11	9	2	0	0	0	copy fasta	DEFB131A	chr4	9439414	9455666
DEFB131A_chr4_9439414_9455666	0/0	a0003	70	1	1	0	0	0	0	copy fasta	DEFB131A	chr4	9439414	9455666
DEFB131B_chr11_71873453_71889561	0/0	a0001	70	414	97	70	192	12	43	copy fasta	DEFB131B	chr11	71873453	71889561
DEFB131B_chr11_71873453_71889561	0/0	a0002	70	1	1	0	0	0	0	copy fasta	DEFB131B	chr11	71873453	71889561
DEFB131B_chr11_71873453_71889561	0/0	a0003	70	1	0	0	0	0	1	copy fasta	DEFB131B	chr11	71873453	71889561
DEFB132_chr20_252724_266096	0/0	a0001	93	238	52	38	115	11	22	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	1/1	a0002	95	152	30	29	69	7	15	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	0/0	a0003	93	10	2	0	7	0	1	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	0/0	a0004	93	10	0	0	8	0	2	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	0/0	a0005	95	9	0	0	9	0	0	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	0/0	a0006	95	5	5	0	0	0	0	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	0/0	a0007	93	3	3	0	0	0	0	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	0/0	a0008	3	1	0	1	0	0	0	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	0/0	a0009	93	1	0	0	1	0	0	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	0/0	a0010	93	1	0	0	1	0	0	copy fasta	DEFB132	chr20	252724	266096
DEFB134_chr8_11988174_12005752	1/1	a0001	66	446	100	77	203	18	46	copy fasta	DEFB134	chr8	11988174	12005752
DEFB134_chr8_11988174_12005752	0/0	a0002	56	1	0	1	0	0	0	copy fasta	DEFB134	chr8	11988174	12005752
DEFB134_chr8_11988174_12005752	0/0	a0003	66	1	0	0	1	0	0	copy fasta	DEFB134	chr8	11988174	12005752
DEFB135_chr8_11977256_11989590	1/1	a0001	77	420	92	69	194	18	45	copy fasta	DEFB135	chr8	11977256	11989590
DEFB135_chr8_11977256_11989590	0/0	a0002	77	9	7	1	0	0	1	copy fasta	DEFB135	chr8	11977256	11989590
DEFB135_chr8_11977256_11989590	0/0	a0003	77	1	1	0	0	0	0	copy fasta	DEFB135	chr8	11977256	11989590
DEFB136_chr8_11968937_11979599	1/1	a0001	78	424	94	74	188	16	50	copy fasta	DEFB136	chr8	11968937	11979599
DEFB136_chr8_11968937_11979599	0/0	a0002	78	1	1	0	0	0	0	copy fasta	DEFB136	chr8	11968937	11979599
DEFB136_chr8_11968937_11979599	0/0	a0003	78	1	1	0	0	0	0	copy fasta	DEFB136	chr8	11968937	11979599
DEFB1_chr8_6865592_6882936	1/1	a0001	68	449	83	78	224	18	44	copy fasta	DEFB1	chr8	6865592	6882936
DEFB1_chr8_6865592_6882936	0/0	a0002	68	20	15	0	5	0	0	copy fasta	DEFB1	chr8	6865592	6882936
DEFB1_chr8_6865592_6882936	0/0	a0003	68	6	0	0	6	0	0	copy fasta	DEFB1	chr8	6865592	6882936
DEFB1_chr8_6865592_6882936	0/0	a0004	68	1	1	0	0	0	0	copy fasta	DEFB1	chr8	6865592	6882936
DEFB1_chr8_6865592_6882936	0/0	a0005	36	1	1	0	0	0	0	copy fasta	DEFB1	chr8	6865592	6882936
DEFB1_chr8_6865592_6882936	0/0	a0006	68	1	0	0	1	0	0	copy fasta	DEFB1	chr8	6865592	6882936
DEFB4A_chr8_7889677_7901716	0/0	a0001	64	94	20	28	26	4	16	copy fasta	DEFB4A	chr8	7889677	7901716
DEFB4B_chr8_7409855_7421863	0/0	a0001	64	141	18	44	66	5	8	copy fasta	DEFB4B	chr8	7409855	7421863
DEFB4B_chr8_7409855_7421863	0/0	a0002	64	1	0	0	0	1	0	copy fasta	DEFB4B	chr8	7409855	7421863
DEGS1_chr1_224178240_224198441	1/1	a0001	323	422	96	78	186	16	44	copy fasta	DEGS1	chr1	224178240	224198441
DEGS1_chr1_224178240_224198441	0/0	a0002	323	1	0	0	1	0	0	copy fasta	DEGS1	chr1	224178240	224198441
DEGS1_chr1_224178240_224198441	0/0	a0003	323	1	1	0	0	0	0	copy fasta	DEGS1	chr1	224178240	224198441