JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DEGS1_chr1_224178240_224198441	0/0	a0004	323	1	0	0	1	0	0	copy fasta	DEGS1	chr1	224178240	224198441
DEGS1_chr1_224178240_224198441	0/0	a0005	323	1	1	0	0	0	0	copy fasta	DEGS1	chr1	224178240	224198441
DEGS2_chr14_100138957_100164645	0/0	a0001	323	333	88	60	146	10	29	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	a0002	323	58	5	14	27	3	9	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	1/1	a0003	323	37	3	8	15	2	7	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	a0004	323	4	0	0	4	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	a0005	323	2	0	0	0	0	2	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	a0006	323	1	1	0	0	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	a0007	323	1	0	0	0	1	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	a0008	323	1	0	0	0	0	1	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	a0009	323	1	1	0	0	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	a0010	323	1	0	0	1	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	a0011	323	1	0	0	1	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEK_chr6_18218860_18269530	1/1	a0001	375	345	86	66	144	14	33	copy fasta	DEK	chr6	18218860	18269530
DEK_chr6_18218860_18269530	0/0	a0002	375	19	2	10	2	0	5	copy fasta	DEK	chr6	18218860	18269530
DELE1_chr5_141918871_141947047	1/1	a0001	515	254	60	46	104	11	31	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	a0002	515	59	3	20	26	5	5	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	a0003	515	35	17	3	8	2	5	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	a0004	515	7	7	0	0	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	a0005	515	4	4	0	0	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	a0006	515	2	1	1	0	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	a0007	515	1	1	0	0	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	a0008	515	1	0	0	1	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	a0009	515	1	0	0	0	0	1	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	a0010	515	1	0	0	1	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	a0011	515	1	0	0	0	0	1	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	a0012	515	1	1	0	0	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	a0013	515	1	0	0	0	0	1	copy fasta	DELE1	chr5	141918871	141947047
DENND10_chr10_119099113_119142984	1/1	a0001	357	339	75	67	151	12	32	copy fasta	DENND10	chr10	119099113	119142984
DENND10_chr10_119099113_119142984	0/0	a0002	357	21	15	3	3	0	0	copy fasta	DENND10	chr10	119099113	119142984
DENND10_chr10_119099113_119142984	0/0	a0003	357	10	0	0	10	0	0	copy fasta	DENND10	chr10	119099113	119142984
DENND10_chr10_119099113_119142984	0/0	a0004	357	2	2	0	0	0	0	copy fasta	DENND10	chr10	119099113	119142984
DENND10_chr10_119099113_119142984	0/0	a0005	357	1	1	0	0	0	0	copy fasta	DENND10	chr10	119099113	119142984
DENND10_chr10_119099113_119142984	0/0	a0006	357	1	1	0	0	0	0	copy fasta	DENND10	chr10	119099113	119142984
DENND11_chr7_141651728_141707166	0/1	a0001	455	342	75	62	150	16	38	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	a0002	455	1	0	0	1	0	0	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	a0003	455	1	1	0	0	0	0	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	a0004	455	1	0	0	1	0	0	copy fasta	DENND11	chr7	141651728	141707166
DENND1A_chr9_123374658_123935126	1/1	a0001	1070	152	71	25	28	4	22	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	a0002	1070	4	4	0	0	0	0	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	a0003	1070	2	0	0	2	0	0	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	a0004	1070	2	0	2	0	0	0	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	a0005	1070	1	1	0	0	0	0	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	a0006	1070	1	0	1	0	0	0	copy fasta	DENND1A	chr9	123374658	123935126
DENND1B_chr1_197499748_197780480	1/1	a0001	775	266	74	42	111	8	29	copy fasta	DENND1B	chr1	197499748	197780480
DENND1B_chr1_197499748_197780480	0/0	a0002	775	4	0	0	4	0	0	copy fasta	DENND1B	chr1	197499748	197780480
DENND1B_chr1_197499748_197780480	0/0	a0003	775	2	0	1	1	0	0	copy fasta	DENND1B	chr1	197499748	197780480
DENND1B_chr1_197499748_197780480	0/0	a0004	775	2	0	0	2	0	0	copy fasta	DENND1B	chr1	197499748	197780480
DENND1B_chr1_197499748_197780480	0/0	a0005	775	2	0	1	0	0	1	copy fasta	DENND1B	chr1	197499748	197780480
DENND1B_chr1_197499748_197780480	0/0	a0006	775	1	1	0	0	0	0	copy fasta	DENND1B	chr1	197499748	197780480