JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DENND1B_chr1_197499748_197780480	0/0	a0007	775	1	1	0	0	0	0	copy fasta	DENND1B	chr1	197499748	197780480
DENND1B_chr1_197499748_197780480	0/0	a0008	775	1	0	0	1	0	0	copy fasta	DENND1B	chr1	197499748	197780480
DENND1B_chr1_197499748_197780480	0/0	a0009	775	1	0	0	1	0	0	copy fasta	DENND1B	chr1	197499748	197780480
DENND1C_chr19_6462207_6486787	1/0	a0001	801	335	56	52	175	12	39	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/1	a0002	801	54	21	20	0	5	7	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	a0003	801	5	0	0	5	0	0	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	a0004	801	5	1	3	0	0	1	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	a0005	801	3	3	0	0	0	0	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	a0006	801	3	3	0	0	0	0	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	a0007	801	2	2	0	0	0	0	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	a0008	801	2	2	0	0	0	0	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	a0009	801	2	2	0	0	0	0	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	a0010	801	1	0	1	0	0	0	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	a0011	801	1	0	0	1	0	0	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	a0012	801	1	0	0	0	1	0	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	a0013	801	1	0	0	0	0	1	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	a0014	801	1	1	0	0	0	0	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	a0015	801	1	1	0	0	0	0	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	a0016	801	1	1	0	0	0	0	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	a0017	801	1	0	0	1	0	0	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	a0018	801	1	1	0	0	0	0	copy fasta	DENND1C	chr19	6462207	6486787
DENND2A_chr7_140513420_140645813	0/0	a0001	1009	120	21	34	38	4	23	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/1	a0002	1009	70	20	22	11	4	12	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	a0003	1009	41	34	3	0	1	3	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	1/0	a0004	1009	6	1	3	0	1	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	a0005	1009	3	3	0	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	a0006	1009	2	2	0	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	a0007	1009	2	2	0	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	a0008	1009	2	0	0	2	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	a0009	1009	1	1	0	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	a0010	1009	1	1	0	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	a0011	1009	1	1	0	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	a0012	1009	1	0	1	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	a0013	1009	1	1	0	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	a0014	1009	1	0	0	1	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	a0015	1009	1	0	1	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	a0016	1009	1	1	0	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2B_chr11_8688352_8815674	1/0	a0001	1137	141	72	14	41	2	11	copy fasta	DENND2B	chr11	8688352	8815674
DENND2B_chr11_8688352_8815674	0/1	a0002	1137	91	3	19	53	4	11	copy fasta	DENND2B	chr11	8688352	8815674
DENND2B_chr11_8688352_8815674	0/0	a0003	1137	90	12	19	42	7	10	copy fasta	DENND2B	chr11	8688352	8815674
DENND2B_chr11_8688352_8815674	0/0	a0004	1137	7	1	3	0	0	3	copy fasta	DENND2B	chr11	8688352	8815674
DENND2B_chr11_8688352_8815674	0/0	a0005	1137	6	0	0	6	0	0	copy fasta	DENND2B	chr11	8688352	8815674
DENND2B_chr11_8688352_8815674	0/0	a0006	1137	6	0	0	4	1	1	copy fasta	DENND2B	chr11	8688352	8815674
DENND2B_chr11_8688352_8815674	0/0	a0007	1137	3	0	1	2	0	0	copy fasta	DENND2B	chr11	8688352	8815674
DENND2B_chr11_8688352_8815674	0/0	a0008	1137	2	0	0	2	0	0	copy fasta	DENND2B	chr11	8688352	8815674
DENND2B_chr11_8688352_8815674	0/0	a0009	1137	1	1	0	0	0	0	copy fasta	DENND2B	chr11	8688352	8815674
DENND2B_chr11_8688352_8815674	0/0	a0010	1137	1	0	1	0	0	0	copy fasta	DENND2B	chr11	8688352	8815674
DENND2B_chr11_8688352_8815674	0/0	a0011	1137	1	0	1	0	0	0	copy fasta	DENND2B	chr11	8688352	8815674
DENND2B_chr11_8688352_8815674	0/0	a0012	1137	1	1	0	0	0	0	copy fasta	DENND2B	chr11	8688352	8815674
DENND2B_chr11_8688352_8815674	0/0	a0013	1137	1	0	0	1	0	0	copy fasta	DENND2B	chr11	8688352	8815674