JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DENND2B_chr11_8688352_8815674	0/0	a0014	1137	1	0	0	1	0	0	copy fasta	DENND2B	chr11	8688352	8815674
DENND2C_chr1_114577850_114675049	1/0	a0001	928	219	62	36	105	2	13	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	a0002	928	36	2	12	10	6	6	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	a0003	928	23	1	12	0	1	9	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/1	a0004	928	15	4	4	1	1	4	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	a0005	928	2	0	2	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	a0006	928	2	2	0	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	a0007	928	1	1	0	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	a0008	928	1	0	0	1	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	a0009	928	1	0	0	1	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2D_chr1_111180969_111205646	1/1	a0001	471	465	94	82	221	16	50	copy fasta	DENND2D	chr1	111180969	111205646
DENND2D_chr1_111180969_111205646	0/0	a0002	471	3	3	0	0	0	0	copy fasta	DENND2D	chr1	111180969	111205646
DENND2D_chr1_111180969_111205646	0/0	a0003	471	1	0	0	1	0	0	copy fasta	DENND2D	chr1	111180969	111205646
DENND2D_chr1_111180969_111205646	0/0	a0004	471	1	1	0	0	0	0	copy fasta	DENND2D	chr1	111180969	111205646
DENND2D_chr1_111180969_111205646	0/0	a0005	471	1	0	0	1	0	0	copy fasta	DENND2D	chr1	111180969	111205646
DENND2D_chr1_111180969_111205646	0/0	a0006	471	1	0	0	1	0	0	copy fasta	DENND2D	chr1	111180969	111205646
DENND3_chr8_141123589_141200804	0/1	a0001	1278	194	22	41	86	10	34	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	a0002	1278	126	37	23	57	0	9	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	1/0	a0003	1278	31	8	12	2	5	3	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	a0004	1278	8	8	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	a0005	1278	6	0	0	6	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	a0006	1278	5	5	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	a0007	1278	5	0	0	5	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	a0008	1278	2	2	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	a0009	1278	2	0	0	2	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	a0010	1278	2	1	1	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	a0011	1278	1	1	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	a0012	1278	1	1	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	a0013	1278	1	0	0	1	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	a0014	1278	1	0	0	1	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	a0015	1278	1	0	0	0	0	1	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	a0016	1278	1	1	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	a0017	1278	1	0	0	0	0	1	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	a0018	1278	1	0	1	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	a0019	1278	1	0	0	0	1	0	copy fasta	DENND3	chr8	141123589	141200804
DENND4A_chr15_65654123_65797293	1/1	a0001	1907	276	64	49	114	12	35	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	a0002	1907	19	17	2	0	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	a0003	1907	2	2	0	0	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	a0004	1907	1	0	0	1	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	a0005	1907	1	0	0	1	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	a0006	1907	1	0	0	0	0	1	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	a0007	1907	1	0	0	0	0	1	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	a0008	1907	1	1	0	0	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	a0009	1907	1	0	1	0	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	a0010	1907	1	0	0	0	0	1	copy fasta	DENND4A	chr15	65654123	65797293
DENND4B_chr1_153924501_153951718	1/1	a0001	1496	201	65	31	77	6	20	copy fasta	DENND4B	chr1	153924501	153951718
DENND4B_chr1_153924501_153951718	0/0	a0002	1493	119	11	35	59	3	11	copy fasta	DENND4B	chr1	153924501	153951718
DENND4B_chr1_153924501_153951718	0/0	a0003	1497	58	8	12	30	1	7	copy fasta	DENND4B	chr1	153924501	153951718
DENND4B_chr1_153924501_153951718	0/0	a0004	1493	1	0	0	1	0	0	copy fasta	DENND4B	chr1	153924501	153951718
DENND4B_chr1_153924501_153951718	0/0	a0005	1497	1	0	0	1	0	0	copy fasta	DENND4B	chr1	153924501	153951718