JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DENND4B_chr1_153924501_153951718	0/0	a0006	1496	1	0	0	1	0	0	copy fasta	DENND4B	chr1	153924501	153951718
DENND4B_chr1_153924501_153951718	0/0	a0007	1493	1	0	0	1	0	0	copy fasta	DENND4B	chr1	153924501	153951718
DENND4B_chr1_153924501_153951718	0/0	a0008	1496	1	1	0	0	0	0	copy fasta	DENND4B	chr1	153924501	153951718
DENND4B_chr1_153924501_153951718	0/0	a0009	1496	1	0	0	1	0	0	copy fasta	DENND4B	chr1	153924501	153951718
DENND4B_chr1_153924501_153951718	0/0	a0010	1496	1	1	0	0	0	0	copy fasta	DENND4B	chr1	153924501	153951718
DENND4B_chr1_153924501_153951718	0/0	a0011	101	1	0	0	1	0	0	copy fasta	DENND4B	chr1	153924501	153951718
DENND4C_chr9_19225693_19379281	1/1	a0001	1958	225	58	41	84	13	27	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	a0002	1958	14	13	1	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	a0003	1958	13	0	11	0	1	1	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	a0004	1958	6	6	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	a0005	1958	3	3	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	a0006	1958	3	3	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	a0007	1958	3	3	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	a0008	1958	3	0	0	0	2	1	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	a0009	1958	2	0	2	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	a0010	1958	2	0	0	2	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	a0011	1958	2	2	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	a0012	1564	1	1	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	a0013	1958	1	0	0	0	0	1	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	a0014	1958	1	0	0	1	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	a0015	1958	1	1	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	a0016	1958	1	0	0	1	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	a0017	1958	1	1	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	a0018	1958	1	0	1	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	a0019	1958	1	1	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	a0020	1958	1	0	0	1	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	a0021	1958	1	0	0	1	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	a0022	1958	1	0	0	1	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	a0023	1958	1	0	0	1	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	a0024	1958	1	1	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	a0025	1958	1	1	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	a0026	1958	1	0	1	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	a0027	1958	1	0	1	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND5A_chr11_9133825_9270350	1/0	a0001	1287	179	66	44	36	10	22	copy fasta	DENND5A	chr11	9133825	9270350
DENND5A_chr11_9133825_9270350	0/1	a0002	1287	96	20	16	39	4	16	copy fasta	DENND5A	chr11	9133825	9270350
DENND5A_chr11_9133825_9270350	0/0	a0003	1287	4	0	0	4	0	0	copy fasta	DENND5A	chr11	9133825	9270350
DENND5A_chr11_9133825_9270350	0/0	a0004	1287	2	2	0	0	0	0	copy fasta	DENND5A	chr11	9133825	9270350
DENND5A_chr11_9133825_9270350	0/0	a0005	1287	1	1	0	0	0	0	copy fasta	DENND5A	chr11	9133825	9270350
DENND5A_chr11_9133825_9270350	0/0	a0006	1287	1	0	0	1	0	0	copy fasta	DENND5A	chr11	9133825	9270350
DENND5A_chr11_9133825_9270350	0/0	a0007	1287	1	1	0	0	0	0	copy fasta	DENND5A	chr11	9133825	9270350
DENND5B_chr12_31377226_31596136	1/0	a0001	1274	131	54	22	29	6	19	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/1	a0002	1274	90	12	12	50	5	10	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	a0003	1274	81	27	10	37	3	4	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	a0004	1274	1	0	0	1	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	a0005	1274	1	0	1	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	a0006	1274	1	0	0	1	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	a0007	1274	1	0	0	0	0	1	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	a0008	1274	1	1	0	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	a0009	1274	1	0	1	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND6A_chr3_57620454_57698077	1/1	a0001	608	330	92	64	122	12	38	copy fasta	DENND6A	chr3	57620454	57698077