JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DENND6A_chr3_57620454_57698077	0/0	a0002	608	1	0	0	1	0	0	copy fasta	DENND6A	chr3	57620454	57698077
DENND6A_chr3_57620454_57698077	0/0	a0003	608	1	0	0	1	0	0	copy fasta	DENND6A	chr3	57620454	57698077
DENND6B_chr22_50304030_50332012	1/1	a0001	585	209	63	39	82	5	18	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	a0002	585	81	13	22	26	6	14	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	a0003	585	27	10	1	14	1	1	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	a0004	518	4	0	2	2	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	a0005	585	1	0	0	1	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	a0006	518	1	0	0	1	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	a0007	585	1	0	0	0	0	1	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	a0008	585	1	0	0	1	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	a0009	585	1	0	0	1	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENR_chr12_122747824_122776064	1/1	a0001	198	363	93	66	144	16	42	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	a0002	198	1	1	0	0	0	0	copy fasta	DENR	chr12	122747824	122776064
DEPDC1B_chr5_60591912_60705166	1/1	a0001	529	286	72	54	115	14	29	copy fasta	DEPDC1B	chr5	60591912	60705166
DEPDC1B_chr5_60591912_60705166	0/0	a0002	529	2	2	0	0	0	0	copy fasta	DEPDC1B	chr5	60591912	60705166
DEPDC1B_chr5_60591912_60705166	0/0	a0003	529	1	0	0	0	0	1	copy fasta	DEPDC1B	chr5	60591912	60705166
DEPDC1B_chr5_60591912_60705166	0/0	a0004	529	1	0	0	1	0	0	copy fasta	DEPDC1B	chr5	60591912	60705166
DEPDC1B_chr5_60591912_60705166	0/0	a0005	529	1	0	0	1	0	0	copy fasta	DEPDC1B	chr5	60591912	60705166
DEPDC1B_chr5_60591912_60705166	0/0	a0006	529	1	0	0	1	0	0	copy fasta	DEPDC1B	chr5	60591912	60705166
DEPDC1_chr1_68469152_68502082	1/1	a0001	811	334	87	63	131	15	36	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	a0002	811	19	7	1	8	1	2	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	a0003	811	4	0	0	4	0	0	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	a0004	811	2	0	0	2	0	0	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	a0005	811	1	0	0	1	0	0	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	a0006	811	1	0	0	1	0	0	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	a0007	811	1	1	0	0	0	0	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	a0008	811	1	1	0	0	0	0	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	a0009	811	1	0	0	1	0	0	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC4_chr12_100235062_100272079	1/1	a0001	496	318	68	68	128	13	39	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	a0002	496	29	22	6	0	1	0	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	a0003	496	2	2	0	0	0	0	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	a0004	496	2	2	0	0	0	0	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	a0005	496	1	0	0	1	0	0	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	a0006	496	1	0	0	0	0	1	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	a0007	496	1	1	0	0	0	0	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	a0008	496	1	0	0	1	0	0	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	a0009	496	1	0	0	1	0	0	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	a0010	496	1	1	0	0	0	0	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	a0011	516	1	0	0	1	0	0	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC5_chr22_31749019_31913033	1/1	a0001	1603	169	54	42	44	5	22	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	a0002	1603	10	0	5	5	0	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	a0003	1603	8	7	1	0	0	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	a0004	1603	5	5	0	0	0	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	a0005	1603	4	2	0	0	2	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	a0006	1603	3	3	0	0	0	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	a0007	1603	2	1	0	0	1	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	a0008	1603	2	2	0	0	0	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	a0009	1603	1	0	0	1	0	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC7_chr11_33010878_33038582	0/0	a0000	0	1	0	1	0	0	0	copy fasta	DEPDC7	chr11	33010878	33038582
DEPDC7_chr11_33010878_33038582	1/1	a0001	511	380	90	59	186	14	29	copy fasta	DEPDC7	chr11	33010878	33038582