JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DEPDC7_chr11_33010878_33038582	0/0	a0002	511	31	0	11	11	2	7	copy fasta	DEPDC7	chr11	33010878	33038582
DEPDC7_chr11_33010878_33038582	0/0	a0003	511	5	0	3	0	0	2	copy fasta	DEPDC7	chr11	33010878	33038582
DEPDC7_chr11_33010878_33038582	0/0	a0004	511	3	0	0	3	0	0	copy fasta	DEPDC7	chr11	33010878	33038582
DEPDC7_chr11_33010878_33038582	0/0	a0005	511	1	0	0	1	0	0	copy fasta	DEPDC7	chr11	33010878	33038582
DEPDC7_chr11_33010878_33038582	0/0	a0006	511	1	0	0	1	0	0	copy fasta	DEPDC7	chr11	33010878	33038582
DEPP1_chr10_44971128_44983809	1/1	a0001	212	385	89	61	176	14	43	copy fasta	DEPP1	chr10	44971128	44983809
DEPP1_chr10_44971128_44983809	0/0	a0002	210	28	4	8	15	0	1	copy fasta	DEPP1	chr10	44971128	44983809
DEPP1_chr10_44971128_44983809	0/0	a0003	212	4	3	1	0	0	0	copy fasta	DEPP1	chr10	44971128	44983809
DEPP1_chr10_44971128_44983809	0/0	a0004	212	3	0	0	3	0	0	copy fasta	DEPP1	chr10	44971128	44983809
DEPP1_chr10_44971128_44983809	0/0	a0005	212	1	0	1	0	0	0	copy fasta	DEPP1	chr10	44971128	44983809
DEPP1_chr10_44971128_44983809	0/0	a0006	212	1	1	0	0	0	0	copy fasta	DEPP1	chr10	44971128	44983809
DEPP1_chr10_44971128_44983809	0/0	a0007	212	1	0	1	0	0	0	copy fasta	DEPP1	chr10	44971128	44983809
DEPP1_chr10_44971128_44983809	0/0	a0008	212	1	1	0	0	0	0	copy fasta	DEPP1	chr10	44971128	44983809
DEPTOR_chr8_119868722_120055918	0/1	a0001	409	79	35	8	7	3	25	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	1/0	a0002	409	64	26	11	6	6	14	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	0/0	a0003	409	40	8	12	10	3	7	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	0/0	a0004	409	7	6	1	0	0	0	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	0/0	a0005	409	4	2	2	0	0	0	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	0/0	a0006	409	2	0	2	0	0	0	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	0/0	a0007	409	1	0	0	1	0	0	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	0/0	a0008	409	1	1	0	0	0	0	copy fasta	DEPTOR	chr8	119868722	120055918
DERA_chr12_15906332_16042381	1/1	a0001	318	255	80	52	92	4	25	copy fasta	DERA	chr12	15906332	16042381
DERA_chr12_15906332_16042381	0/0	a0002	318	2	2	0	0	0	0	copy fasta	DERA	chr12	15906332	16042381
DERA_chr12_15906332_16042381	0/0	a0003	318	1	0	0	0	0	1	copy fasta	DERA	chr12	15906332	16042381
DERL1_chr8_123008170_123047302	1/1	a0001	251	398	84	70	197	9	36	copy fasta	DERL1	chr8	123008170	123047302
DERL1_chr8_123008170_123047302	0/0	a0002	251	13	1	5	4	1	2	copy fasta	DERL1	chr8	123008170	123047302
DERL1_chr8_123008170_123047302	0/0	a0003	251	1	1	0	0	0	0	copy fasta	DERL1	chr8	123008170	123047302
DERL1_chr8_123008170_123047302	0/0	a0004	251	1	0	1	0	0	0	copy fasta	DERL1	chr8	123008170	123047302
DERL1_chr8_123008170_123047302	0/0	a0005	251	1	0	0	1	0	0	copy fasta	DERL1	chr8	123008170	123047302
DERL2_chr17_5466254_5491178	1/1	a0001	239	427	94	75	200	14	42	copy fasta	DERL2	chr17	5466254	5491178
DERL2_chr17_5466254_5491178	0/0	a0002	116	1	0	1	0	0	0	copy fasta	DERL2	chr17	5466254	5491178
DERL3_chr22_23829503_23844006	0/1	a0001	235	279	17	56	168	8	29	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	a0002	235	94	51	9	14	4	16	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	a0003	235	50	26	13	6	4	1	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	a0004	235	6	0	0	6	0	0	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	a0005	235	1	1	0	0	0	0	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	a0006	235	1	1	0	0	0	0	copy fasta	DERL3	chr22	23829503	23844006
DERPC_chr16_69113010_69137588	1/1	a0001	524	308	91	63	94	15	43	copy fasta	DERPC	chr16	69113010	69137588
DERPC_chr16_69113010_69137588	0/0	a0002	524	27	0	7	19	0	1	copy fasta	DERPC	chr16	69113010	69137588
DERPC_chr16_69113010_69137588	0/0	a0003	524	3	0	2	0	1	0	copy fasta	DERPC	chr16	69113010	69137588
DERPC_chr16_69113010_69137588	0/0	a0004	524	2	0	1	0	0	1	copy fasta	DERPC	chr16	69113010	69137588
DERPC_chr16_69113010_69137588	0/0	a0005	524	1	0	0	0	0	1	copy fasta	DERPC	chr16	69113010	69137588
DERPC_chr16_69113010_69137588	0/0	a0006	524	1	0	1	0	0	0	copy fasta	DERPC	chr16	69113010	69137588
DERPC_chr16_69113010_69137588	0/0	a0007	524	1	0	0	1	0	0	copy fasta	DERPC	chr16	69113010	69137588
DERPC_chr16_69113010_69137588	0/0	a0008	524	1	1	0	0	0	0	copy fasta	DERPC	chr16	69113010	69137588
DERPC_chr16_69113010_69137588	0/0	a0009	524	1	1	0	0	0	0	copy fasta	DERPC	chr16	69113010	69137588
DERPC_chr16_69113010_69137588	0/0	a0010	524	1	1	0	0	0	0	copy fasta	DERPC	chr16	69113010	69137588
DESI1_chr22_41593028_41626043	1/1	a0001	168	308	90	58	112	12	34	copy fasta	DESI1	chr22	41593028	41626043
DESI2_chr1_244648126_244714033	1/1	a0001	194	360	88	68	158	14	30	copy fasta	DESI2	chr1	244648126	244714033
DES_chr2_219413377_219431734	1/1	a0001	470	371	89	75	162	12	31	copy fasta	DES	chr2	219413377	219431734