JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DES_chr2_219413377_219431734	0/0	a0002	470	3	3	0	0	0	0	copy fasta	DES	chr2	219413377	219431734
DES_chr2_219413377_219431734	0/0	a0003	470	1	0	0	0	0	1	copy fasta	DES	chr2	219413377	219431734
DES_chr2_219413377_219431734	0/0	a0004	470	1	0	1	0	0	0	copy fasta	DES	chr2	219413377	219431734
DET1_chr15_88507480_88551681	1/1	a0001	550	399	95	63	179	16	44	copy fasta	DET1	chr15	88507480	88551681
DET1_chr15_88507480_88551681	0/0	a0002	550	1	0	0	1	0	0	copy fasta	DET1	chr15	88507480	88551681
DET1_chr15_88507480_88551681	0/0	a0003	550	1	0	1	0	0	0	copy fasta	DET1	chr15	88507480	88551681
DET1_chr15_88507480_88551681	0/0	a0004	550	1	1	0	0	0	0	copy fasta	DET1	chr15	88507480	88551681
DEUP1_chr11_93325742_93443470	0/1	a0001	604	180	44	34	77	5	19	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	a0002	604	119	17	19	65	5	13	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	1/0	a0003	604	57	12	8	27	0	9	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	a0004	604	2	2	0	0	0	0	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	a0005	604	1	0	1	0	0	0	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	a0006	604	1	1	0	0	0	0	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	a0007	604	1	1	0	0	0	0	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	a0008	604	1	0	0	0	0	1	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	a0009	467	1	1	0	0	0	0	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	a0010	604	1	0	0	0	0	1	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	a0011	604	1	0	0	0	0	1	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	a0012	604	1	0	0	1	0	0	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	a0013	604	1	1	0	0	0	0	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	a0014	604	1	1	0	0	0	0	copy fasta	DEUP1	chr11	93325742	93443470
DEXI_chr16_10923891_10947468	1/1	a0001	95	454	94	74	220	18	46	copy fasta	DEXI	chr16	10923891	10947468
DFFA_chr1_10451522_10477529	1/1	a0001	331	229	44	28	114	13	28	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	a0002	47	195	46	49	80	1	19	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	a0003	331	5	0	0	5	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	a0004	331	3	3	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	a0005	331	2	1	1	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	a0006	175	1	1	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	a0007	331	1	0	0	0	0	1	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	a0008	331	1	0	0	1	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	a0009	331	1	1	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFB_chr1_3852476_3890429	1/1	a0001	338	342	84	75	128	12	41	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	a0002	338	55	6	7	37	2	3	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	a0003	338	3	0	0	3	0	0	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	a0004	338	2	0	0	0	0	2	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	a0005	338	1	1	0	0	0	0	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	a0006	338	1	1	0	0	0	0	copy fasta	DFFB	chr1	3852476	3890429
DGAT1_chr8_144309584_144331852	1/1	a0001	488	358	84	70	144	13	45	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	a0002	488	5	0	2	0	3	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	a0003	488	2	0	0	2	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	a0004	488	1	0	0	1	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	a0005	488	1	0	0	0	0	1	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	a0006	488	1	0	0	1	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	a0007	488	1	0	0	0	0	1	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	a0008	488	1	0	0	0	0	1	copy fasta	DGAT1	chr8	144309584	144331852
DGAT2L6_chrX_70172483_70210704	1/1	a0001	337	273	78	47	105	11	30	copy fasta	DGAT2L6	chrX	70172483	70210704
DGAT2L6_chrX_70172483_70210704	0/0	a0002	337	1	0	0	1	0	0	copy fasta	DGAT2L6	chrX	70172483	70210704
DGAT2_chr11_75763778_75806534	1/1	a0001	388	309	78	46	142	8	33	copy fasta	DGAT2	chr11	75763778	75806534
DGAT2_chr11_75763778_75806534	0/0	a0002	388	9	8	0	0	0	1	copy fasta	DGAT2	chr11	75763778	75806534
DGAT2_chr11_75763778_75806534	0/0	a0003	388	3	0	0	3	0	0	copy fasta	DGAT2	chr11	75763778	75806534