JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DGAT2_chr11_75763778_75806534	0/0	a0004	388	1	0	0	0	0	1	copy fasta	DGAT2	chr11	75763778	75806534
DGAT2_chr11_75763778_75806534	0/0	a0005	388	1	0	0	0	0	1	copy fasta	DGAT2	chr11	75763778	75806534
DGAT2_chr11_75763778_75806534	0/0	a0006	388	1	0	0	1	0	0	copy fasta	DGAT2	chr11	75763778	75806534
DGCR2_chr22_19031286_19127412	1/0	a0001	550	158	37	31	68	5	16	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/1	a0002	550	153	49	29	54	5	15	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	a0003	550	30	0	8	17	0	5	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	a0004	550	1	0	0	1	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	a0005	550	1	0	0	1	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	a0006	550	1	0	0	1	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR6L_chr22_20309238_20325060	1/1	a0001	220	358	91	63	156	12	34	copy fasta	DGCR6L	chr22	20309238	20325060
DGCR6L_chr22_20309238_20325060	0/0	a0002	220	30	0	9	19	0	2	copy fasta	DGCR6L	chr22	20309238	20325060
DGCR6L_chr22_20309238_20325060	0/0	a0003	220	2	0	0	2	0	0	copy fasta	DGCR6L	chr22	20309238	20325060
DGCR6L_chr22_20309238_20325060	0/0	a0004	220	1	0	0	1	0	0	copy fasta	DGCR6L	chr22	20309238	20325060
DGCR6L_chr22_20309238_20325060	0/0	a0005	220	1	1	0	0	0	0	copy fasta	DGCR6L	chr22	20309238	20325060
DGCR6_chr22_18901320_18917088	0/1	a0001	220	381	78	77	168	15	42	copy fasta	DGCR6	chr22	18901320	18917088
DGCR6_chr22_18901320_18917088	0/0	a0002	220	12	2	3	1	0	6	copy fasta	DGCR6	chr22	18901320	18917088
DGCR6_chr22_18901320_18917088	0/0	a0003	220	12	10	2	0	0	0	copy fasta	DGCR6	chr22	18901320	18917088
DGCR6_chr22_18901320_18917088	0/0	a0004	222	3	0	0	3	0	0	copy fasta	DGCR6	chr22	18901320	18917088
DGCR6_chr22_18901320_18917088	0/0	a0005	220	2	2	0	0	0	0	copy fasta	DGCR6	chr22	18901320	18917088
DGCR6_chr22_18901320_18917088	0/0	a0006	130	1	1	0	0	0	0	copy fasta	DGCR6	chr22	18901320	18917088
DGCR6_chr22_18901320_18917088	0/0	a0007	220	1	0	0	0	1	0	copy fasta	DGCR6	chr22	18901320	18917088
DGCR6_chr22_18901320_18917088	0/0	a0008	220	1	1	0	0	0	0	copy fasta	DGCR6	chr22	18901320	18917088
DGCR8_chr22_20075241_20116872	1/0	a0001	773	386	95	59	172	17	42	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	a0002	773	22	0	2	18	0	2	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	a0003	773	4	0	3	0	1	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	a0004	773	1	0	0	1	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	a0005	773	1	1	0	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	a0006	773	1	1	0	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	a0007	750	1	0	0	1	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	a0008	773	1	1	0	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	a0009	773	1	0	0	1	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	a0010	773	1	0	0	1	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGKA_chr12_55926162_55959023	1/1	a0001	735	326	72	66	134	17	35	copy fasta	DGKA	chr12	55926162	55959023
DGKA_chr12_55926162_55959023	0/0	a0002	735	1	0	0	0	1	0	copy fasta	DGKA	chr12	55926162	55959023
DGKA_chr12_55926162_55959023	0/0	a0003	735	1	0	0	0	0	1	copy fasta	DGKA	chr12	55926162	55959023
DGKB_chr7_14140049_14907751	1/1	a0001	803	141	65	22	38	4	10	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	a0002	803	5	2	0	3	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	a0003	803	1	1	0	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	a0004	803	1	0	0	1	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKD_chr2_233349494_233477098	1/1	a0001	1214	331	91	63	132	14	29	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	a0002	1214	1	0	0	1	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	a0003	1214	1	0	0	1	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	a0004	1214	1	0	0	0	0	1	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	a0005	1214	1	0	1	0	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	a0006	1214	1	1	0	0	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKE_chr17_56829151_56874567	1/1	a0001	567	317	88	67	107	12	41	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	a0002	567	3	3	0	0	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	a0003	567	1	0	1	0	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	a0004	268	1	0	0	0	0	1	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	a0005	559	1	1	0	0	0	0	copy fasta	DGKE	chr17	56829151	56874567