JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DGKE_chr17_56829151_56874567	0/0	a0006	567	1	0	0	1	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKG_chr3_186142201_186367234	0/0	a0001	791	101	44	23	19	1	14	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/1	a0002	791	88	29	22	17	6	13	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	a0003	791	27	1	4	15	1	6	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	1/0	a0004	791	12	5	3	0	0	3	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	a0005	791	3	3	0	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	a0006	791	1	0	0	1	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	a0007	791	1	1	0	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	a0008	791	1	1	0	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKH_chr13_42043648_42247896	1/1	a0001	1220	258	64	51	100	7	34	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	a0002	1220	30	2	3	19	3	3	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	a0003	1220	13	10	3	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	a0004	1220	5	0	0	5	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	a0005	1220	2	2	0	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	a0006	1220	1	0	1	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	a0007	1220	1	0	1	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	a0008	1220	1	0	1	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	a0009	1220	1	0	0	1	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	a0010	1220	1	0	0	1	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	a0011	1220	1	0	0	1	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	a0012	1220	1	0	0	1	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	a0013	1220	1	0	0	0	0	1	copy fasta	DGKH	chr13	42043648	42247896
DGKI_chr7_137376037_137851974	1/1	a0001	1057	91	71	8	4	0	6	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	a0002	1057	3	3	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKK_chrX_50360409_50475825	1/1	a0001	1271	196	51	38	81	5	19	copy fasta	DGKK	chrX	50360409	50475825
DGKK_chrX_50360409_50475825	0/0	a0002	1271	31	0	11	16	1	3	copy fasta	DGKK	chrX	50360409	50475825
DGKK_chrX_50360409_50475825	0/0	a0003	1269	8	5	2	0	1	0	copy fasta	DGKK	chrX	50360409	50475825
DGKK_chrX_50360409_50475825	0/0	a0004	1269	5	5	0	0	0	0	copy fasta	DGKK	chrX	50360409	50475825
DGKK_chrX_50360409_50475825	0/0	a0005	1271	4	4	0	0	0	0	copy fasta	DGKK	chrX	50360409	50475825
DGKK_chrX_50360409_50475825	0/0	a0006	362	1	0	0	1	0	0	copy fasta	DGKK	chrX	50360409	50475825
DGKK_chrX_50360409_50475825	0/0	a0007	1271	1	1	0	0	0	0	copy fasta	DGKK	chrX	50360409	50475825
DGKK_chrX_50360409_50475825	0/0	a0008	1271	1	0	1	0	0	0	copy fasta	DGKK	chrX	50360409	50475825
DGKK_chrX_50360409_50475825	0/0	a0009	832	1	0	0	1	0	0	copy fasta	DGKK	chrX	50360409	50475825
DGKQ_chr4_953887_978569	1/1	a0001	942	363	90	73	164	13	21	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	a0002	942	49	3	3	24	3	16	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	a0003	942	6	0	0	1	0	5	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	a0004	942	3	0	0	3	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	a0005	942	2	2	0	0	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	a0006	942	2	0	0	2	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	a0007	942	1	0	1	0	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	a0008	942	1	0	0	1	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	a0009	942	1	0	0	1	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	a0010	942	1	0	0	1	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	a0011	942	1	0	1	0	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	a0012	942	1	0	0	1	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	a0013	942	1	0	0	1	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	a0014	942	1	0	0	1	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	a0015	942	1	0	0	1	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	a0016	942	1	0	0	1	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	a0017	942	1	0	0	1	0	0	copy fasta	DGKQ	chr4	953887	978569