Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ADGRD1_chr12_130948907_131146469	0/0	a0006	874	1	1	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	a0007	874	1	1	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	a0008	874	1	1	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	a0009	874	1	0	1	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	a0010	874	1	1	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	a0011	874	1	0	0	0	1	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/1	a0012	874	1	0	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD2_chr9_124445451_124483580	0/0	a0001	982	127	37	21	53	6	10	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	1/0	a0002	982	46	0	13	18	3	11	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/1	a0003	982	38	3	13	9	3	9	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0004	982	31	0	0	31	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0005	982	28	13	1	14	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0006	982	11	7	0	4	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0007	982	11	0	7	3	0	1	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0008	982	9	0	8	1	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0009	982	9	1	0	8	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0010	982	7	0	1	3	0	3	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0011	982	5	5	0	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0012	982	5	2	0	1	0	2	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0013	982	5	0	0	5	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0014	982	5	5	0	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0015	982	4	0	0	1	0	3	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0016	982	4	0	0	1	0	3	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0017	982	3	0	3	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0018	982	3	1	0	1	0	1	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0019	982	2	0	0	2	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0020	982	2	1	0	1	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0021	982	2	1	0	1	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0022	982	2	0	0	2	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0023	982	2	0	2	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0024	982	2	1	0	1	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0025	982	2	1	1	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0026	982	2	0	0	1	0	1	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0027	982	1	1	0	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0028	982	1	0	0	1	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0029	982	1	1	0	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0030	982	1	1	0	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0031	982	1	1	0	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0032	982	1	0	0	0	0	1	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0033	982	1	1	0	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0034	982	1	1	0	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0035	982	1	0	0	0	0	1	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0036	982	1	0	0	1	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0037	982	1	0	1	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0038	982	1	0	0	1	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0039	982	1	1	0	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0040	982	1	0	0	1	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0041	982	1	0	1	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0042	982	1	0	0	1	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0043	982	1	1	0	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580