JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DGKQ_chr4_953887_978569	0/0	a0018	942	1	0	0	1	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	a0019	942	1	1	0	0	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKZ_chr11_46342463_46385551	1/1	a0001	928	271	95	58	72	8	36	copy fasta	DGKZ	chr11	46342463	46385551
DGKZ_chr11_46342463_46385551	0/0	a0002	928	1	1	0	0	0	0	copy fasta	DGKZ	chr11	46342463	46385551
DGLUCY_chr14_91109073_91230632	1/1	a0001	621	96	36	24	18	3	13	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	a0002	621	43	21	8	9	1	4	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	a0003	621	29	3	19	2	2	3	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	a0004	621	8	2	1	4	0	1	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	a0005	621	7	7	0	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	a0006	621	5	5	0	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	a0007	621	4	4	0	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	a0008	621	4	0	0	4	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	a0009	621	3	3	0	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	a0010	621	3	3	0	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	a0011	621	3	3	0	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	a0012	621	3	3	0	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	a0013	621	2	2	0	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	a0014	621	1	1	0	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	a0015	621	1	0	1	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	a0016	621	1	0	1	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	a0017	621	1	0	0	0	0	1	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	a0018	621	1	1	0	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	a0019	621	1	0	0	1	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGUOK_chr2_73921880_73963946	1/1	a0001	277	346	93	53	147	11	40	copy fasta	DGUOK	chr2	73921880	73963946
DGUOK_chr2_73921880_73963946	0/0	a0002	277	2	0	1	0	1	0	copy fasta	DGUOK	chr2	73921880	73963946
DGUOK_chr2_73921880_73963946	0/0	a0003	277	1	0	1	0	0	0	copy fasta	DGUOK	chr2	73921880	73963946
DGUOK_chr2_73921880_73963946	0/0	a0004	277	1	0	0	1	0	0	copy fasta	DGUOK	chr2	73921880	73963946
DGUOK_chr2_73921880_73963946	0/0	a0005	277	1	1	0	0	0	0	copy fasta	DGUOK	chr2	73921880	73963946
DGUOK_chr2_73921880_73963946	0/0	a0006	277	1	0	1	0	0	0	copy fasta	DGUOK	chr2	73921880	73963946
DHCR24_chr1_54844627_54892195	1/1	a0001	516	383	84	69	174	16	38	copy fasta	DHCR24	chr1	54844627	54892195
DHCR24_chr1_54844627_54892195	0/0	a0002	516	1	1	0	0	0	0	copy fasta	DHCR24	chr1	54844627	54892195
DHCR24_chr1_54844627_54892195	0/0	a0003	516	1	1	0	0	0	0	copy fasta	DHCR24	chr1	54844627	54892195
DHCR24_chr1_54844627_54892195	0/0	a0004	516	1	0	1	0	0	0	copy fasta	DHCR24	chr1	54844627	54892195
DHCR7_chr11_71429411_71453393	1/1	a0001	475	397	83	70	179	16	47	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	a0002	475	6	6	0	0	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	a0003	475	1	0	0	1	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	a0004	475	1	0	0	1	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	a0005	475	1	0	0	0	0	1	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	a0006	475	1	0	0	1	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	a0007	475	1	0	0	1	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	a0008	475	1	1	0	0	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	a0009	68	1	0	0	1	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHDDS_chr1_26427321_26476306	0/0	a0001	333	200	58	53	49	15	25	copy fasta	DHDDS	chr1	26427321	26476306
DHDDS_chr1_26427321_26476306	0/0	a0002	333	114	32	21	49	1	11	copy fasta	DHDDS	chr1	26427321	26476306
DHDH_chr19_48928699_48949969	1/1	a0001	334	178	22	36	78	11	29	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	a0002	204	114	3	23	77	1	10	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	a0003	334	47	32	4	9	0	2	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	a0004	232	25	6	2	14	0	3	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	a0005	334	21	18	3	0	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	a0006	204	14	0	1	12	1	0	copy fasta	DHDH	chr19	48928699	48949969