JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DHDH_chr19_48928699_48949969	0/0	a0007	334	8	1	4	1	1	1	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	a0008	334	4	0	0	3	1	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	a0009	334	3	3	0	0	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	a0010	334	3	3	0	0	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	a0011	232	2	0	0	2	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	a0012	334	2	2	0	0	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	a0013	334	2	1	1	0	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	a0014	334	2	2	0	0	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	a0015	232	1	0	1	0	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	a0016	334	1	1	0	0	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	a0017	232	1	1	0	0	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	a0018	334	1	1	0	0	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	a0019	185	1	0	0	0	0	1	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	a0020	204	1	0	0	1	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	a0021	334	1	0	0	0	1	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	a0022	334	1	0	1	0	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	a0023	334	1	1	0	0	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	a0024	204	1	1	0	0	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	a0025	25	1	0	0	1	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHFR2_chr3_94052922_94067916	1/0	a0001	187	302	91	49	121	11	29	copy fasta	DHFR2	chr3	94052922	94067916
DHFR2_chr3_94052922_94067916	0/1	a0002	187	60	0	19	29	3	8	copy fasta	DHFR2	chr3	94052922	94067916
DHFR2_chr3_94052922_94067916	0/0	a0003	187	31	1	4	19	2	5	copy fasta	DHFR2	chr3	94052922	94067916
DHFR2_chr3_94052922_94067916	0/0	a0004	187	1	0	0	1	0	0	copy fasta	DHFR2	chr3	94052922	94067916
DHFR_chr5_80621226_80659983	0/0	a0001	187	376	90	72	158	16	40	copy fasta	DHFR	chr5	80621226	80659983
DHH_chr12_49081656_49099801	1/1	a0001	396	422	95	64	201	18	42	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	a0002	396	1	0	0	1	0	0	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	a0003	251	1	1	0	0	0	0	copy fasta	DHH	chr12	49081656	49099801
DHODH_chr16_72003744_72032659	0/0	a0001	395	233	45	57	102	7	22	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	1/1	a0002	395	157	41	20	62	7	25	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	a0003	395	16	0	2	11	2	1	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	a0004	395	2	2	0	0	0	0	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	a0005	395	2	2	0	0	0	0	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	a0006	395	1	0	1	0	0	0	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	a0007	409	1	0	1	0	0	0	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	a0008	395	1	0	0	1	0	0	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	a0009	395	1	0	1	0	0	0	copy fasta	DHODH	chr16	72003744	72032659
DHPS_chr19_12670717_12686880	1/1	a0001	369	379	75	68	168	16	50	copy fasta	DHPS	chr19	12670717	12686880
DHPS_chr19_12670717_12686880	0/0	a0002	369	20	19	1	0	0	0	copy fasta	DHPS	chr19	12670717	12686880
DHPS_chr19_12670717_12686880	0/0	a0003	369	1	0	1	0	0	0	copy fasta	DHPS	chr19	12670717	12686880
DHRS11_chr17_36586879_36605804	0/1	a0001	260	382	86	70	170	10	45	copy fasta	DHRS11	chr17	36586879	36605804
DHRS11_chr17_36586879_36605804	0/0	a0002	260	2	0	1	0	0	1	copy fasta	DHRS11	chr17	36586879	36605804
DHRS11_chr17_36586879_36605804	0/0	a0003	260	1	0	1	0	0	0	copy fasta	DHRS11	chr17	36586879	36605804
DHRS12_chr13_51762993_51809163	1/0	a0001	268	329	68	40	173	14	33	copy fasta	DHRS12	chr13	51762993	51809163
DHRS12_chr13_51762993_51809163	0/0	a0002	268	51	24	23	0	0	4	copy fasta	DHRS12	chr13	51762993	51809163
DHRS12_chr13_51762993_51809163	0/1	a0003	268	35	1	15	9	2	7	copy fasta	DHRS12	chr13	51762993	51809163
DHRS12_chr13_51762993_51809163	0/0	a0004	268	1	0	0	1	0	0	copy fasta	DHRS12	chr13	51762993	51809163
DHRS12_chr13_51762993_51809163	0/0	a0005	268	1	0	1	0	0	0	copy fasta	DHRS12	chr13	51762993	51809163
DHRS12_chr13_51762993_51809163	0/0	a0006	268	1	0	0	1	0	0	copy fasta	DHRS12	chr13	51762993	51809163
DHRS12_chr13_51762993_51809163	0/0	a0007	268	1	1	0	0	0	0	copy fasta	DHRS12	chr13	51762993	51809163
DHRS12_chr13_51762993_51809163	0/0	a0008	268	1	0	1	0	0	0	copy fasta	DHRS12	chr13	51762993	51809163