JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DHRS13_chr17_28892781_28908079	1/1	a0001	377	365	70	71	165	12	45	copy fasta	DHRS13	chr17	28892781	28908079
DHRS13_chr17_28892781_28908079	0/0	a0002	377	45	24	7	11	2	1	copy fasta	DHRS13	chr17	28892781	28908079
DHRS13_chr17_28892781_28908079	0/0	a0003	377	2	0	0	2	0	0	copy fasta	DHRS13	chr17	28892781	28908079
DHRS1_chr14_24285598_24304780	1/1	a0001	313	376	72	66	179	16	41	copy fasta	DHRS1	chr14	24285598	24304780
DHRS1_chr14_24285598_24304780	0/0	a0002	313	30	16	4	7	0	3	copy fasta	DHRS1	chr14	24285598	24304780
DHRS1_chr14_24285598_24304780	0/0	a0003	313	5	0	0	5	0	0	copy fasta	DHRS1	chr14	24285598	24304780
DHRS1_chr14_24285598_24304780	0/0	a0004	313	3	0	0	3	0	0	copy fasta	DHRS1	chr14	24285598	24304780
DHRS2_chr14_23631364_23650639	0/0	a0000	0	1	0	0	1	0	0	copy fasta	DHRS2	chr14	23631364	23650639
DHRS2_chr14_23631364_23650639	1/1	a0001	280	440	93	81	196	18	50	copy fasta	DHRS2	chr14	23631364	23650639
DHRS2_chr14_23631364_23650639	0/0	a0002	280	2	0	0	2	0	0	copy fasta	DHRS2	chr14	23631364	23650639
DHRS2_chr14_23631364_23650639	0/0	a0003	280	1	0	1	0	0	0	copy fasta	DHRS2	chr14	23631364	23650639
DHRS2_chr14_23631364_23650639	0/0	a0004	280	1	0	0	1	0	0	copy fasta	DHRS2	chr14	23631364	23650639
DHRS2_chr14_23631364_23650639	0/0	a0005	280	1	1	0	0	0	0	copy fasta	DHRS2	chr14	23631364	23650639
DHRS3_chr1_12562910_12623210	1/1	a0001	302	365	92	51	161	16	43	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	a0002	302	8	0	6	2	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	a0003	302	1	0	1	0	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	a0004	302	1	0	0	1	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	a0005	302	1	0	0	0	0	1	copy fasta	DHRS3	chr1	12562910	12623210
DHRS4L2_chr14_23983929_24011403	1/0	a0001	232	28	0	14	2	3	8	copy fasta	DHRS4L2	chr14	23983929	24011403
DHRS4L2_chr14_23983929_24011403	0/0	a0002	232	2	0	1	0	1	0	copy fasta	DHRS4L2	chr14	23983929	24011403
DHRS4L2_chr14_23983929_24011403	0/0	a0003	232	1	0	1	0	0	0	copy fasta	DHRS4L2	chr14	23983929	24011403
DHRS4L2_chr14_23983929_24011403	0/1	a0004	158	1	0	0	0	0	0	copy fasta	DHRS4L2	chr14	23983929	24011403
DHRS4_chr14_23948770_23974279	0/0	a0000	0	25	3	6	12	1	3	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	1/0	a0001	278	173	31	39	78	6	18	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	a0002	278	51	41	7	0	1	2	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	a0003	278	7	5	2	0	0	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	a0004	278	3	0	1	0	1	1	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	a0005	278	2	2	0	0	0	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	a0006	278	1	0	0	1	0	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	a0007	278	1	1	0	0	0	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	a0008	278	1	0	0	0	1	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	a0009	278	1	0	0	1	0	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	a0010	278	1	0	1	0	0	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	a0011	278	1	1	0	0	0	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS7B_chr17_21121964_21196420	1/1	a0001	325	376	87	62	175	12	38	copy fasta	DHRS7B	chr17	21121964	21196420
DHRS7B_chr17_21121964_21196420	0/0	a0002	325	2	0	0	2	0	0	copy fasta	DHRS7B	chr17	21121964	21196420
DHRS7B_chr17_21121964_21196420	0/0	a0003	325	2	0	0	2	0	0	copy fasta	DHRS7B	chr17	21121964	21196420
DHRS7B_chr17_21121964_21196420	0/0	a0004	325	1	1	0	0	0	0	copy fasta	DHRS7B	chr17	21121964	21196420
DHRS7B_chr17_21121964_21196420	0/0	a0005	325	1	0	0	1	0	0	copy fasta	DHRS7B	chr17	21121964	21196420
DHRS7C_chr17_9766438_9796592	1/1	a0001	311	370	89	73	158	12	36	copy fasta	DHRS7C	chr17	9766438	9796592
DHRS7C_chr17_9766438_9796592	0/0	a0002	311	43	6	5	21	2	9	copy fasta	DHRS7C	chr17	9766438	9796592
DHRS7C_chr17_9766438_9796592	0/0	a0003	311	4	0	0	4	0	0	copy fasta	DHRS7C	chr17	9766438	9796592
DHRS7C_chr17_9766438_9796592	0/0	a0004	311	2	0	2	0	0	0	copy fasta	DHRS7C	chr17	9766438	9796592
DHRS7C_chr17_9766438_9796592	0/0	a0005	311	1	0	0	0	0	1	copy fasta	DHRS7C	chr17	9766438	9796592
DHRS7C_chr17_9766438_9796592	0/0	a0006	311	1	0	0	1	0	0	copy fasta	DHRS7C	chr17	9766438	9796592
DHRS7C_chr17_9766438_9796592	0/0	a0007	311	1	1	0	0	0	0	copy fasta	DHRS7C	chr17	9766438	9796592
DHRS7C_chr17_9766438_9796592	0/0	a0008	311	1	1	0	0	0	0	copy fasta	DHRS7C	chr17	9766438	9796592
DHRS7C_chr17_9766438_9796592	0/0	a0009	311	1	1	0	0	0	0	copy fasta	DHRS7C	chr17	9766438	9796592
DHRS7_chr14_60139119_60170398	1/1	a0001	339	379	78	67	179	16	37	copy fasta	DHRS7	chr14	60139119	60170398
DHRS7_chr14_60139119_60170398	0/0	a0002	339	3	3	0	0	0	0	copy fasta	DHRS7	chr14	60139119	60170398