JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DHRS7_chr14_60139119_60170398	0/0	a0003	339	2	0	1	0	0	1	copy fasta	DHRS7	chr14	60139119	60170398
DHRS7_chr14_60139119_60170398	0/0	a0004	339	2	1	1	0	0	0	copy fasta	DHRS7	chr14	60139119	60170398
DHRS7_chr14_60139119_60170398	0/0	a0005	339	1	0	1	0	0	0	copy fasta	DHRS7	chr14	60139119	60170398
DHRS7_chr14_60139119_60170398	0/0	a0006	339	1	0	0	1	0	0	copy fasta	DHRS7	chr14	60139119	60170398
DHRS9_chr2_169064563_169101167	1/1	a0001	319	383	81	70	172	16	42	copy fasta	DHRS9	chr2	169064563	169101167
DHRS9_chr2_169064563_169101167	0/0	a0002	319	5	5	0	0	0	0	copy fasta	DHRS9	chr2	169064563	169101167
DHRS9_chr2_169064563_169101167	0/0	a0003	319	3	3	0	0	0	0	copy fasta	DHRS9	chr2	169064563	169101167
DHRS9_chr2_169064563_169101167	0/0	a0004	319	2	0	0	2	0	0	copy fasta	DHRS9	chr2	169064563	169101167
DHRS9_chr2_169064563_169101167	0/0	a0005	319	1	1	0	0	0	0	copy fasta	DHRS9	chr2	169064563	169101167
DHRS9_chr2_169064563_169101167	0/0	a0006	319	1	0	0	1	0	0	copy fasta	DHRS9	chr2	169064563	169101167
DHRS9_chr2_169064563_169101167	0/0	a0007	319	1	1	0	0	0	0	copy fasta	DHRS9	chr2	169064563	169101167
DHRS9_chr2_169064563_169101167	0/0	a0008	319	1	0	0	1	0	0	copy fasta	DHRS9	chr2	169064563	169101167
DHRS9_chr2_169064563_169101167	0/0	a0009	319	1	1	0	0	0	0	copy fasta	DHRS9	chr2	169064563	169101167
DHRSX_chrX_2214506_2505976	0/0	a0001	330	21	4	3	11	0	3	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	0/0	a0002	330	11	4	2	4	1	0	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	0/1	a0003	330	5	0	3	0	0	1	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	0/0	a0004	330	5	4	0	0	0	1	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	0/0	a0005	330	2	2	0	0	0	0	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	0/0	a0006	330	1	1	0	0	0	0	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	0/0	a0007	321	1	0	1	0	0	0	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	0/0	a0008	317	1	0	1	0	0	0	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	1/0	a0009	330	1	0	0	0	0	0	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	0/0	a0010	330	1	1	0	0	0	0	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	0/0	a0011	330	1	0	1	0	0	0	copy fasta	DHRSX	chrX	2214506	2505976
DHTKD1_chr10_12063954_12128221	0/0	a0000	0	1	0	0	1	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/1	a0001	919	161	17	27	85	6	25	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	a0002	919	107	30	23	45	4	5	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	a0003	919	80	19	21	32	4	4	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	a0004	919	6	6	0	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	1/0	a0005	919	5	4	0	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	a0006	919	3	3	0	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	a0007	919	2	2	0	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	a0008	919	1	0	0	1	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	a0009	919	1	0	1	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	a0010	919	1	0	0	1	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	a0011	919	1	1	0	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	a0012	919	1	1	0	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	a0013	919	1	0	1	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	a0014	919	1	1	0	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	a0015	919	1	0	0	1	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	a0016	919	1	0	1	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHX15_chr4_24522475_24589554	1/1	a0001	795	373	92	73	154	14	38	copy fasta	DHX15	chr4	24522475	24589554
DHX15_chr4_24522475_24589554	0/0	a0002	795	1	0	1	0	0	0	copy fasta	DHX15	chr4	24522475	24589554
DHX16_chr6_30648127_30678006	0/1	a0001	1041	364	84	58	168	13	40	copy fasta	DHX16	chr6	30648127	30678006
DHX16_chr6_30648127_30678006	0/0	a0002	1041	3	0	0	0	0	3	copy fasta	DHX16	chr6	30648127	30678006
DHX16_chr6_30648127_30678006	0/0	a0003	1041	3	0	0	3	0	0	copy fasta	DHX16	chr6	30648127	30678006
DHX16_chr6_30648127_30678006	0/0	a0004	1041	2	2	0	0	0	0	copy fasta	DHX16	chr6	30648127	30678006
DHX16_chr6_30648127_30678006	0/0	a0005	1041	2	0	2	0	0	0	copy fasta	DHX16	chr6	30648127	30678006
DHX16_chr6_30648127_30678006	0/0	a0006	1041	2	2	0	0	0	0	copy fasta	DHX16	chr6	30648127	30678006
DHX16_chr6_30648127_30678006	0/0	a0007	1041	2	0	0	0	2	0	copy fasta	DHX16	chr6	30648127	30678006