JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DHX16_chr6_30648127_30678006	0/0	a0008	1041	2	0	1	0	1	0	copy fasta	DHX16	chr6	30648127	30678006
DHX16_chr6_30648127_30678006	0/0	a0009	1041	1	0	0	1	0	0	copy fasta	DHX16	chr6	30648127	30678006
DHX16_chr6_30648127_30678006	0/0	a0010	1041	1	0	0	0	0	1	copy fasta	DHX16	chr6	30648127	30678006
DHX16_chr6_30648127_30678006	0/0	a0011	1041	1	0	1	0	0	0	copy fasta	DHX16	chr6	30648127	30678006
DHX29_chr5_55251055_55312694	1/1	a0001	1369	328	85	52	150	11	28	copy fasta	DHX29	chr5	55251055	55312694
DHX29_chr5_55251055_55312694	0/0	a0002	1369	2	0	0	2	0	0	copy fasta	DHX29	chr5	55251055	55312694
DHX29_chr5_55251055_55312694	0/0	a0003	1369	2	1	1	0	0	0	copy fasta	DHX29	chr5	55251055	55312694
DHX29_chr5_55251055_55312694	0/0	a0004	1369	2	2	0	0	0	0	copy fasta	DHX29	chr5	55251055	55312694
DHX29_chr5_55251055_55312694	0/0	a0005	1369	1	0	0	0	1	0	copy fasta	DHX29	chr5	55251055	55312694
DHX29_chr5_55251055_55312694	0/0	a0006	324	1	0	0	1	0	0	copy fasta	DHX29	chr5	55251055	55312694
DHX29_chr5_55251055_55312694	0/0	a0007	1369	1	0	0	0	0	1	copy fasta	DHX29	chr5	55251055	55312694
DHX29_chr5_55251055_55312694	0/0	a0008	1369	1	0	0	0	0	1	copy fasta	DHX29	chr5	55251055	55312694
DHX29_chr5_55251055_55312694	0/0	a0009	1369	1	0	0	1	0	0	copy fasta	DHX29	chr5	55251055	55312694
DHX29_chr5_55251055_55312694	0/0	a0010	1369	1	0	1	0	0	0	copy fasta	DHX29	chr5	55251055	55312694
DHX30_chr3_47798138_47855193	1/1	a0001	1194	264	77	48	91	8	38	copy fasta	DHX30	chr3	47798138	47855193
DHX30_chr3_47798138_47855193	0/0	a0002	1194	1	0	0	1	0	0	copy fasta	DHX30	chr3	47798138	47855193
DHX30_chr3_47798138_47855193	0/0	a0003	1194	1	1	0	0	0	0	copy fasta	DHX30	chr3	47798138	47855193
DHX32_chr10_125831337_125886292	1/1	a0001	743	401	80	62	196	16	45	copy fasta	DHX32	chr10	125831337	125886292
DHX32_chr10_125831337_125886292	0/0	a0002	743	11	11	0	0	0	0	copy fasta	DHX32	chr10	125831337	125886292
DHX32_chr10_125831337_125886292	0/0	a0003	743	3	0	0	3	0	0	copy fasta	DHX32	chr10	125831337	125886292
DHX32_chr10_125831337_125886292	0/0	a0004	743	2	0	0	2	0	0	copy fasta	DHX32	chr10	125831337	125886292
DHX32_chr10_125831337_125886292	0/0	a0005	743	1	1	0	0	0	0	copy fasta	DHX32	chr10	125831337	125886292
DHX32_chr10_125831337_125886292	0/0	a0006	743	1	1	0	0	0	0	copy fasta	DHX32	chr10	125831337	125886292
DHX32_chr10_125831337_125886292	0/0	a0007	743	1	1	0	0	0	0	copy fasta	DHX32	chr10	125831337	125886292
DHX32_chr10_125831337_125886292	0/0	a0008	743	1	0	0	1	0	0	copy fasta	DHX32	chr10	125831337	125886292
DHX32_chr10_125831337_125886292	0/0	a0009	743	1	1	0	0	0	0	copy fasta	DHX32	chr10	125831337	125886292
DHX32_chr10_125831337_125886292	0/0	a0010	743	1	1	0	0	0	0	copy fasta	DHX32	chr10	125831337	125886292
DHX32_chr10_125831337_125886292	0/0	a0011	743	1	0	0	0	0	1	copy fasta	DHX32	chr10	125831337	125886292
DHX33_chr17_5435917_5473982	1/0	a0001	707	314	63	58	142	10	40	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/1	a0002	707	30	18	5	2	2	2	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	a0003	707	11	6	3	1	0	1	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	a0004	707	1	1	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	a0005	707	1	1	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	a0006	707	1	0	0	1	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	a0007	707	1	0	1	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	a0008	707	1	0	0	0	0	1	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	a0009	707	1	0	1	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	a0010	707	1	0	0	1	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	a0011	707	1	1	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	a0012	707	1	1	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	a0013	707	1	0	0	1	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	a0014	707	1	1	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX34_chr19_47344315_47387704	1/0	a0001	1143	325	64	63	153	10	34	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/1	a0002	1143	24	8	6	0	4	5	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	a0003	1141	4	0	1	3	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	a0004	1143	3	3	0	0	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	a0005	1143	3	3	0	0	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	a0006	1143	3	0	3	0	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	a0007	1143	2	2	0	0	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	a0008	1143	2	0	0	2	0	0	copy fasta	DHX34	chr19	47344315	47387704