JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DHX34_chr19_47344315_47387704	0/0	a0009	1143	2	0	0	0	0	2	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	a0010	1143	1	0	1	0	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	a0011	1143	1	0	0	1	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	a0012	1143	1	0	1	0	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	a0013	1143	1	0	0	1	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	a0014	1143	1	0	1	0	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	a0015	1143	1	0	0	0	0	1	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	a0016	1098	1	0	0	1	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	a0017	1143	1	0	1	0	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	a0018	1143	1	0	0	1	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	a0019	1143	1	0	0	0	0	1	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	a0020	1143	1	0	0	0	0	1	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	a0021	1143	1	1	0	0	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	a0022	1143	1	0	1	0	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	a0023	1143	1	1	0	0	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX35_chr20_38957344_39044721	1/1	a0001	703	197	59	29	82	5	20	copy fasta	DHX35	chr20	38957344	39044721
DHX35_chr20_38957344_39044721	0/0	a0002	703	77	14	13	44	1	5	copy fasta	DHX35	chr20	38957344	39044721
DHX35_chr20_38957344_39044721	0/0	a0003	703	4	0	4	0	0	0	copy fasta	DHX35	chr20	38957344	39044721
DHX35_chr20_38957344_39044721	0/0	a0004	703	3	0	0	3	0	0	copy fasta	DHX35	chr20	38957344	39044721
DHX35_chr20_38957344_39044721	0/0	a0005	703	2	0	0	0	0	2	copy fasta	DHX35	chr20	38957344	39044721
DHX35_chr20_38957344_39044721	0/0	a0006	703	2	2	0	0	0	0	copy fasta	DHX35	chr20	38957344	39044721
DHX35_chr20_38957344_39044721	0/0	a0007	703	1	0	0	0	0	1	copy fasta	DHX35	chr20	38957344	39044721
DHX35_chr20_38957344_39044721	0/0	a0008	703	1	0	0	1	0	0	copy fasta	DHX35	chr20	38957344	39044721
DHX35_chr20_38957344_39044721	0/0	a0009	703	1	1	0	0	0	0	copy fasta	DHX35	chr20	38957344	39044721
DHX35_chr20_38957344_39044721	0/0	a0010	703	1	0	0	1	0	0	copy fasta	DHX35	chr20	38957344	39044721
DHX35_chr20_38957344_39044721	0/0	a0011	703	1	0	0	1	0	0	copy fasta	DHX35	chr20	38957344	39044721
DHX36_chr3_154267546_154329487	1/1	a0001	1008	199	43	37	87	8	22	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	a0002	1008	163	33	23	89	8	10	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	a0003	1008	1	0	0	1	0	0	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	a0004	1008	1	0	0	0	0	1	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	a0005	1000	1	0	0	1	0	0	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	a0006	1008	1	0	0	0	0	1	copy fasta	DHX36	chr3	154267546	154329487
DHX37_chr12_124941826_124994131	0/0	a0001	1157	130	22	26	61	3	18	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	a0002	1157	83	13	9	44	4	13	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	1/0	a0003	1157	63	26	19	14	2	1	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	a0004	1157	38	20	6	5	3	4	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	a0005	1157	9	0	5	0	4	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	a0006	1157	5	0	5	0	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	a0007	1157	5	0	3	0	2	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	a0008	1157	3	1	1	0	0	1	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	a0009	1157	3	0	0	3	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	a0010	1157	3	3	0	0	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/1	a0011	1157	3	0	1	0	0	1	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	a0012	1157	2	2	0	0	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	a0013	1157	2	0	2	0	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	a0014	1157	2	0	0	0	0	2	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	a0015	1157	2	2	0	0	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	a0016	1157	1	0	1	0	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	a0017	1157	1	1	0	0	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	a0018	1157	1	0	0	1	0	0	copy fasta	DHX37	chr12	124941826	124994131