JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DHX37_chr12_124941826_124994131	0/0	a0019	1157	1	0	0	1	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	a0020	1157	1	0	1	0	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	a0021	1157	1	0	1	0	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	a0022	1157	1	1	0	0	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	a0023	1157	1	1	0	0	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	a0024	1157	1	0	0	1	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	a0025	1157	1	0	0	1	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	a0026	1157	1	0	0	1	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	a0027	1157	1	0	0	1	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	a0028	1157	1	1	0	0	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	a0029	1157	1	1	0	0	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	a0030	1157	1	1	0	0	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	a0031	1157	1	1	0	0	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	a0032	1157	1	0	0	1	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX38_chr16_72088847_72117912	1/1	a0001	1227	367	82	75	151	15	42	copy fasta	DHX38	chr16	72088847	72117912
DHX38_chr16_72088847_72117912	0/0	a0002	1227	4	0	2	0	0	2	copy fasta	DHX38	chr16	72088847	72117912
DHX38_chr16_72088847_72117912	0/0	a0003	1227	4	0	0	4	0	0	copy fasta	DHX38	chr16	72088847	72117912
DHX38_chr16_72088847_72117912	0/0	a0004	1227	3	0	3	0	0	0	copy fasta	DHX38	chr16	72088847	72117912
DHX38_chr16_72088847_72117912	0/0	a0005	1227	1	0	0	1	0	0	copy fasta	DHX38	chr16	72088847	72117912
DHX38_chr16_72088847_72117912	0/0	a0006	1227	1	0	0	0	1	0	copy fasta	DHX38	chr16	72088847	72117912
DHX40_chr17_59560610_59613345	1/1	a0001	779	322	83	46	139	14	38	copy fasta	DHX40	chr17	59560610	59613345
DHX40_chr17_59560610_59613345	0/0	a0002	779	1	0	0	1	0	0	copy fasta	DHX40	chr17	59560610	59613345
DHX40_chr17_59560610_59613345	0/0	a0003	779	1	1	0	0	0	0	copy fasta	DHX40	chr17	59560610	59613345
DHX57_chr2_38792729_38880934	1/1	a0001	1386	135	55	28	34	2	14	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	a0002	1386	126	20	27	58	4	17	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	a0003	1386	5	5	0	0	0	0	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	a0004	1385	3	3	0	0	0	0	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	a0005	1386	3	0	0	0	1	2	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	a0006	1386	2	0	1	0	1	0	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	a0007	1386	2	2	0	0	0	0	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	a0008	1386	2	0	2	0	0	0	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	a0009	1386	1	0	0	1	0	0	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	a0010	1386	1	0	0	1	0	0	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	a0011	1386	1	1	0	0	0	0	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	a0012	1386	1	0	1	0	0	0	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	a0013	1386	1	0	0	0	0	1	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	a0014	1386	1	0	1	0	0	0	copy fasta	DHX57	chr2	38792729	38880934
DHX58_chr17_42096411_42117714	1/1	a0001	678	171	16	44	82	7	20	copy fasta	DHX58	chr17	42096411	42117714
DHX58_chr17_42096411_42117714	0/0	a0002	678	71	31	2	29	1	8	copy fasta	DHX58	chr17	42096411	42117714
DHX58_chr17_42096411_42117714	0/0	a0003	678	57	46	2	9	0	0	copy fasta	DHX58	chr17	42096411	42117714
DHX58_chr17_42096411_42117714	0/0	a0004	678	14	3	3	4	1	3	copy fasta	DHX58	chr17	42096411	42117714
DHX58_chr17_42096411_42117714	0/0	a0005	678	10	1	5	0	4	0	copy fasta	DHX58	chr17	42096411	42117714
DHX58_chr17_42096411_42117714	0/0	a0006	678	5	0	3	0	1	1	copy fasta	DHX58	chr17	42096411	42117714
DHX58_chr17_42096411_42117714	0/0	a0007	678	5	0	0	5	0	0	copy fasta	DHX58	chr17	42096411	42117714
DHX58_chr17_42096411_42117714	0/0	a0008	678	5	0	0	4	0	1	copy fasta	DHX58	chr17	42096411	42117714
DHX58_chr17_42096411_42117714	0/0	a0009	678	4	0	4	0	0	0	copy fasta	DHX58	chr17	42096411	42117714
DHX58_chr17_42096411_42117714	0/0	a0010	678	3	0	1	2	0	0	copy fasta	DHX58	chr17	42096411	42117714
DHX58_chr17_42096411_42117714	0/0	a0011	678	2	0	0	2	0	0	copy fasta	DHX58	chr17	42096411	42117714
DHX58_chr17_42096411_42117714	0/0	a0012	678	1	1	0	0	0	0	copy fasta	DHX58	chr17	42096411	42117714
DHX58_chr17_42096411_42117714	0/0	a0013	678	1	0	1	0	0	0	copy fasta	DHX58	chr17	42096411	42117714