JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DHX58_chr17_42096411_42117714	0/0	a0014	678	1	0	0	1	0	0	copy fasta	DHX58	chr17	42096411	42117714
DHX58_chr17_42096411_42117714	0/0	a0015	678	1	0	1	0	0	0	copy fasta	DHX58	chr17	42096411	42117714
DHX58_chr17_42096411_42117714	0/0	a0016	678	1	0	0	0	0	1	copy fasta	DHX58	chr17	42096411	42117714
DHX8_chr17_43478975_43530670	1/1	a0001	1220	351	76	64	151	14	44	copy fasta	DHX8	chr17	43478975	43530670
DHX8_chr17_43478975_43530670	0/0	a0002	1220	1	1	0	0	0	0	copy fasta	DHX8	chr17	43478975	43530670
DHX8_chr17_43478975_43530670	0/0	a0003	1220	1	1	0	0	0	0	copy fasta	DHX8	chr17	43478975	43530670
DHX8_chr17_43478975_43530670	0/0	a0004	1220	1	0	0	1	0	0	copy fasta	DHX8	chr17	43478975	43530670
DHX9_chr1_182834347_182892982	1/1	a0001	1270	276	88	60	94	8	24	copy fasta	DHX9	chr1	182834347	182892982
DIABLO_chr12_122202668_122231052	1/1	a0001	239	378	85	72	164	14	41	copy fasta	DIABLO	chr12	122202668	122231052
DIABLO_chr12_122202668_122231052	0/0	a0002	239	1	1	0	0	0	0	copy fasta	DIABLO	chr12	122202668	122231052
DIABLO_chr12_122202668_122231052	0/0	a0003	239	1	0	0	0	0	1	copy fasta	DIABLO	chr12	122202668	122231052
DIAPH1_chr5_141510021_141624000	1/1	a0001	1272	295	67	57	119	15	35	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	a0002	1273	13	8	4	1	0	0	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	a0003	1274	9	0	2	6	0	1	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	a0004	1271	4	2	2	0	0	0	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	a0005	1272	2	1	1	0	0	0	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	a0006	1272	2	0	0	0	0	2	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	a0007	1273	2	2	0	0	0	0	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	a0008	1272	2	2	0	0	0	0	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	a0009	1272	1	0	0	0	1	0	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	a0010	1272	1	0	0	0	0	1	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	a0011	1272	1	0	0	1	0	0	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	a0012	1273	1	0	0	1	0	0	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	a0013	1272	1	0	0	1	0	0	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	a0014	1272	1	0	0	0	0	1	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	a0015	1272	1	0	0	1	0	0	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH2_chrX_96679842_97609997	0/0	a0001	1101	144	35	27	61	5	16	copy fasta	DIAPH2	chrX	96679842	97609997
DIAPH2_chrX_96679842_97609997	0/0	a0002	1016	1	0	0	1	0	0	copy fasta	DIAPH2	chrX	96679842	97609997
DIAPH2_chrX_96679842_97609997	0/0	a0003	620	1	0	0	1	0	0	copy fasta	DIAPH2	chrX	96679842	97609997
DIAPH2_chrX_96679842_97609997	0/0	a0004	1101	1	1	0	0	0	0	copy fasta	DIAPH2	chrX	96679842	97609997
DIAPH3_chr13_59660583_60168928	1/1	a0001	1193	177	55	28	58	5	29	copy fasta	DIAPH3	chr13	59660583	60168928
DIAPH3_chr13_59660583_60168928	0/0	a0002	1193	23	5	8	8	1	1	copy fasta	DIAPH3	chr13	59660583	60168928
DIAPH3_chr13_59660583_60168928	0/0	a0003	1193	2	0	2	0	0	0	copy fasta	DIAPH3	chr13	59660583	60168928
DIAPH3_chr13_59660583_60168928	0/0	a0004	1193	2	0	0	0	0	2	copy fasta	DIAPH3	chr13	59660583	60168928
DIAPH3_chr13_59660583_60168928	0/0	a0005	1193	1	1	0	0	0	0	copy fasta	DIAPH3	chr13	59660583	60168928
DIAPH3_chr13_59660583_60168928	0/0	a0006	1193	1	0	1	0	0	0	copy fasta	DIAPH3	chr13	59660583	60168928
DIAPH3_chr13_59660583_60168928	0/0	a0007	1193	1	0	1	0	0	0	copy fasta	DIAPH3	chr13	59660583	60168928
DIAPH3_chr13_59660583_60168928	0/0	a0008	1193	1	1	0	0	0	0	copy fasta	DIAPH3	chr13	59660583	60168928
DICER1_chr14_95081228_95162529	1/1	a0001	1922	297	90	50	121	10	24	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	a0002	1922	2	2	0	0	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	a0003	1922	1	0	1	0	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	a0004	1922	1	1	0	0	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	a0005	1922	1	0	1	0	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	a0006	1922	1	0	0	1	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	a0007	1922	1	1	0	0	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	a0008	317	1	0	0	1	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	a0009	1916	1	0	0	1	0	0	copy fasta	DICER1	chr14	95081228	95162529
DIDO1_chr20_62872743_62931505	0/0	a0001	2240	97	16	17	49	5	10	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/1	a0002	2240	78	9	17	37	2	12	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	a0003	2240	63	14	10	32	3	4	copy fasta	DIDO1	chr20	62872743	62931505