JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DIDO1_chr20_62872743_62931505	0/0	a0004	2240	16	13	1	1	1	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	a0005	2240	13	11	2	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	a0006	2240	12	11	1	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	a0007	2240	6	0	0	6	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	a0008	2240	3	3	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	a0009	2240	3	3	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	a0010	2240	3	1	2	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	a0011	2240	2	1	0	0	1	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	a0012	2240	2	0	2	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	a0013	2240	2	1	1	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	a0014	2240	1	1	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	a0015	2240	1	0	1	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	a0016	2240	1	0	1	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	a0017	2240	1	1	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	a0018	2240	1	0	1	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	1/0	a0019	2240	1	0	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	a0020	2240	1	1	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	a0021	2240	1	1	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	a0022	2240	1	1	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	a0023	2240	1	0	0	1	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	a0024	2236	1	0	1	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	a0025	2240	1	0	1	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	a0026	2240	1	0	0	0	0	1	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	a0027	2240	1	0	0	0	0	1	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	a0028	2240	1	1	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	a0029	2240	1	1	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	a0030	2240	1	1	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	a0031	2240	1	1	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	a0032	2240	1	0	0	1	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	a0033	2240	1	0	0	1	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIMT1_chr5_62382254_62408905	1/1	a0001	313	402	85	62	198	16	39	copy fasta	DIMT1	chr5	62382254	62408905
DIMT1_chr5_62382254_62408905	0/0	a0002	313	1	1	0	0	0	0	copy fasta	DIMT1	chr5	62382254	62408905
DIMT1_chr5_62382254_62408905	0/0	a0003	313	1	0	0	0	0	1	copy fasta	DIMT1	chr5	62382254	62408905
DIO1_chr1_53889187_53916086	1/1	a0001	125	451	99	78	204	18	50	copy fasta	DIO1	chr1	53889187	53916086
DIO1_chr1_53889187_53916086	0/0	a0002	125	1	1	0	0	0	0	copy fasta	DIO1	chr1	53889187	53916086
DIO2_chr14_80192526_80216504	1/1	a0001	132	229	41	38	122	9	17	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	a0002	132	177	55	30	60	7	25	copy fasta	DIO2	chr14	80192526	80216504
DIO3_chr14_101556495_101568452	1/1	a0001	169	385	100	68	157	12	46	copy fasta	DIO3	chr14	101556495	101568452
DIO3_chr14_101556495_101568452	0/0	a0002	169	1	0	0	1	0	0	copy fasta	DIO3	chr14	101556495	101568452
DIP2A_chr21_46453891_46575015	1/1	a0001	1571	343	74	64	158	8	37	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	a0002	1571	16	15	1	0	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	a0003	1571	8	0	2	0	1	5	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	a0004	1571	2	0	1	0	1	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	a0005	1571	1	1	0	0	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	a0006	1571	1	0	0	0	1	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	a0007	1571	1	0	0	1	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	a0008	1571	1	0	0	1	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	a0009	1571	1	0	0	0	1	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2B_chr12_50499985_50753657	1/1	a0001	1576	269	69	56	101	10	31	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	a0002	1576	5	5	0	0	0	0	copy fasta	DIP2B	chr12	50499985	50753657