JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DIP2B_chr12_50499985_50753657	0/0	a0003	1576	2	2	0	0	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	a0004	1576	2	0	2	0	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	a0005	1576	1	0	0	1	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	a0006	1576	1	0	0	1	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	a0007	1576	1	1	0	0	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	a0008	1459	1	0	0	0	0	1	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	a0009	1576	1	1	0	0	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	a0010	1576	1	0	0	1	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2C_chr10_269201_694668	0/0	a0001	1556	88	24	20	34	4	6	copy fasta	DIP2C	chr10	269201	694668
DIPK1A_chr1_92837167_92966462	1/0	a0001	428	196	79	36	44	14	22	copy fasta	DIPK1A	chr1	92837167	92966462
DIPK1A_chr1_92837167_92966462	0/0	a0002	428	2	2	0	0	0	0	copy fasta	DIPK1A	chr1	92837167	92966462
DIPK1A_chr1_92837167_92966462	0/0	a0003	428	1	1	0	0	0	0	copy fasta	DIPK1A	chr1	92837167	92966462
DIPK1A_chr1_92837167_92966462	0/1	a0004	401	1	0	0	0	0	0	copy fasta	DIPK1A	chr1	92837167	92966462
DIPK1B_chr9_136707572_136729742	0/1	a0001	431	354	46	81	176	16	34	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1B_chr9_136707572_136729742	1/0	a0002	431	62	44	3	1	0	13	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1B_chr9_136707572_136729742	0/0	a0003	431	1	0	0	0	0	1	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1B_chr9_136707572_136729742	0/0	a0004	431	1	0	0	1	0	0	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1B_chr9_136707572_136729742	0/0	a0005	431	1	1	0	0	0	0	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1B_chr9_136707572_136729742	0/0	a0006	431	1	1	0	0	0	0	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1B_chr9_136707572_136729742	0/0	a0007	431	1	1	0	0	0	0	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1B_chr9_136707572_136729742	0/0	a0008	431	1	1	0	0	0	0	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1C_chr18_74429775_74462308	0/1	a0001	419	274	50	48	136	8	31	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	a0002	419	145	34	31	55	10	15	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	a0003	419	30	2	1	27	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	1/0	a0004	419	8	6	1	0	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	a0005	419	4	1	0	3	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	a0006	419	3	0	0	3	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	a0007	419	3	3	0	0	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	a0008	419	3	1	1	1	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	a0009	19	2	0	0	2	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	a0010	419	2	0	2	0	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	a0011	419	2	0	0	0	0	2	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	a0012	419	1	1	0	0	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	a0013	419	1	1	0	0	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	a0014	419	1	0	1	0	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	a0015	419	1	1	0	0	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	a0016	419	1	0	1	0	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	a0017	419	1	0	0	1	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	a0018	419	1	0	0	1	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	a0019	419	1	0	0	1	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK2A_chr3_143966823_143997368	1/1	a0001	430	406	93	70	185	16	40	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2A_chr3_143966823_143997368	0/0	a0002	430	1	0	0	1	0	0	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2A_chr3_143966823_143997368	0/0	a0003	430	1	1	0	0	0	0	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2B_chrX_45143373_45205876	0/0	a0001	433	146	1	22	105	4	14	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	1/1	a0002	433	133	49	30	27	9	16	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	a0003	433	7	6	1	0	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	a0004	433	4	2	0	0	0	2	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	a0005	433	3	3	0	0	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	a0006	433	2	0	2	0	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	a0007	433	2	2	0	0	0	0	copy fasta	DIPK2B	chrX	45143373	45205876