Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ADGRD2_chr9_124445451_124483580	0/0	a0044	982	1	0	1	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0045	982	1	1	0	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0046	982	1	0	0	1	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0047	982	1	0	0	1	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0048	982	1	0	0	1	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0049	982	1	1	0	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0050	982	1	0	0	0	0	1	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0051	982	1	1	0	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0052	982	1	1	0	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0053	982	1	1	0	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0054	982	1	1	0	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0055	982	1	1	0	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0056	982	1	1	0	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0057	982	1	0	0	1	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0058	982	1	1	0	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0059	982	1	1	0	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0060	982	1	0	0	1	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0061	982	1	0	1	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0062	982	1	0	0	1	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	a0063	982	1	0	0	0	0	1	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRE1_chr19_6882579_6945450	0/1	a0001	886	60	1	20	27	3	8	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0002	886	42	1	6	28	0	7	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0003	886	41	7	7	16	1	10	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0004	886	26	11	9	0	1	5	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0005	886	19	0	0	18	0	1	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0006	886	13	11	2	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0007	886	10	7	0	0	3	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0008	886	8	3	0	3	0	2	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0009	886	8	0	8	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0010	886	7	2	4	0	0	1	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0011	886	7	7	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0012	886	7	0	2	2	1	2	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	1/0	a0013	886	6	0	0	2	1	2	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0014	886	5	5	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0015	886	5	0	1	0	4	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0016	886	5	5	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0017	886	4	1	3	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0018	886	4	4	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0019	886	3	1	2	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0020	886	3	0	0	3	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0021	886	3	0	1	0	0	2	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0022	886	3	0	1	0	0	2	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0023	886	2	2	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0024	886	2	2	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0025	886	2	0	1	0	1	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0026	886	2	2	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0027	886	2	0	2	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0028	886	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0029	886	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0030	886	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450