JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DIPK2B_chrX_45143373_45205876	0/0	a0008	278	1	0	0	1	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	a0009	205	1	0	0	1	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	a0010	292	1	0	0	1	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	a0011	433	1	1	0	0	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	a0012	433	1	1	0	0	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	a0013	236	1	0	0	1	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	a0014	433	1	1	0	0	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	a0015	277	1	0	0	1	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	a0016	433	1	1	0	0	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	a0017	433	1	1	0	0	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIRAS1_chr19_2709567_2726372	1/1	a0001	198	412	94	78	174	18	46	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS2_chr9_90604832_90647824	1/1	a0001	199	440	92	80	216	10	40	copy fasta	DIRAS2	chr9	90604832	90647824
DIRAS3_chr1_68040962_68055627	1/1	a0001	229	374	92	70	154	14	42	copy fasta	DIRAS3	chr1	68040962	68055627
DIRAS3_chr1_68040962_68055627	0/0	a0002	229	2	0	2	0	0	0	copy fasta	DIRAS3	chr1	68040962	68055627
DIS3L2_chr2_231956713_232342192	1/1	a0001	885	269	76	47	104	10	30	copy fasta	DIS3L2	chr2	231956713	232342192
DIS3L2_chr2_231956713_232342192	0/0	a0002	885	26	17	7	0	0	2	copy fasta	DIS3L2	chr2	231956713	232342192
DIS3L2_chr2_231956713_232342192	0/0	a0003	885	6	0	3	1	0	2	copy fasta	DIS3L2	chr2	231956713	232342192
DIS3L2_chr2_231956713_232342192	0/0	a0004	885	1	1	0	0	0	0	copy fasta	DIS3L2	chr2	231956713	232342192
DIS3L2_chr2_231956713_232342192	0/0	a0005	885	1	0	0	1	0	0	copy fasta	DIS3L2	chr2	231956713	232342192
DIS3L2_chr2_231956713_232342192	0/0	a0006	885	1	0	1	0	0	0	copy fasta	DIS3L2	chr2	231956713	232342192
DIS3L_chr15_66288568_66338898	1/1	a0001	1054	282	67	50	127	9	27	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	a0002	1054	90	9	20	48	2	11	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	a0003	1054	8	1	2	0	3	2	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	a0004	1054	5	5	0	0	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	a0005	1054	5	5	0	0	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	a0006	1054	2	0	0	2	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	a0007	1054	2	2	0	0	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	a0008	32	1	0	0	1	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	a0009	1054	1	0	0	1	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	a0010	1054	1	1	0	0	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	a0011	1054	1	0	0	1	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	a0012	1054	1	1	0	0	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	a0013	1054	1	1	0	0	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3_chr13_72747169_72786900	0/0	a0000	0	1	0	0	0	1	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/1	a0001	958	167	61	26	57	6	16	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	a0002	958	138	7	23	87	3	18	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	1/0	a0003	958	101	22	21	46	4	7	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	a0004	958	2	0	1	0	0	1	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	a0005	958	1	0	0	1	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	a0006	958	1	0	0	0	0	1	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	a0007	958	1	1	0	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	a0008	958	1	0	0	1	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	a0009	958	1	0	1	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	a0010	958	1	1	0	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	a0011	958	1	1	0	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	a0012	958	1	0	0	0	0	1	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	a0013	958	1	0	0	0	0	1	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	a0014	958	1	0	0	1	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	a0015	958	1	0	0	1	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	a0016	958	1	0	0	0	0	1	copy fasta	DIS3	chr13	72747169	72786900