JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DIS3_chr13_72747169_72786900	0/0	a0017	958	1	1	0	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DISC1_chr1_231621790_232046272	1/0	a0001	854	18	4	3	8	0	2	copy fasta	DISC1	chr1	231621790	232046272
DISC1_chr1_231621790_232046272	0/1	a0002	854	9	1	3	3	0	1	copy fasta	DISC1	chr1	231621790	232046272
DISC1_chr1_231621790_232046272	0/0	a0003	854	7	4	1	2	0	0	copy fasta	DISC1	chr1	231621790	232046272
DISC1_chr1_231621790_232046272	0/0	a0004	854	3	1	1	0	0	1	copy fasta	DISC1	chr1	231621790	232046272
DISC1_chr1_231621790_232046272	0/0	a0005	854	1	0	0	1	0	0	copy fasta	DISC1	chr1	231621790	232046272
DISC1_chr1_231621790_232046272	0/0	a0006	854	1	0	0	1	0	0	copy fasta	DISC1	chr1	231621790	232046272
DISC1_chr1_231621790_232046272	0/0	a0007	854	1	0	0	1	0	0	copy fasta	DISC1	chr1	231621790	232046272
DISP1_chr1_222810039_223010995	1/0	a0001	1524	215	50	48	93	8	15	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	a0002	1524	61	10	16	27	0	8	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/1	a0003	1524	17	0	7	0	3	6	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	a0004	1524	10	10	0	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	a0005	1524	7	0	0	5	1	1	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	a0006	1524	7	6	1	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	a0007	1524	6	0	0	5	0	1	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	a0008	1524	3	3	0	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	a0009	1524	2	2	0	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	a0010	1524	2	2	0	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	a0011	1524	2	0	0	0	0	2	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	a0012	1524	1	0	1	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	a0013	417	1	1	0	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	a0014	1524	1	1	0	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	a0015	1524	1	1	0	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	a0016	1524	1	0	0	1	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	a0017	1524	1	1	0	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	a0018	1524	1	1	0	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	a0019	1524	1	1	0	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	a0020	1524	1	0	1	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	a0021	1524	1	1	0	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	a0022	1524	1	1	0	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	a0023	1524	1	0	0	1	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	a0024	1524	1	1	0	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	a0025	1524	1	0	0	1	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	a0026	1524	1	0	0	0	0	1	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	a0027	1524	1	0	0	1	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP2_chr15_40353219_40383621	0/1	a0001	1401	184	49	20	93	5	16	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	1/0	a0002	1401	93	26	18	30	6	12	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	a0003	1401	43	0	2	28	1	12	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	a0004	1401	25	8	9	2	5	1	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	a0005	1401	14	0	11	3	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	a0006	1401	7	0	0	7	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	a0007	1401	5	4	1	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	a0008	1401	3	0	2	0	0	1	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	a0009	1401	2	0	0	2	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	a0010	1401	2	0	0	0	1	1	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	a0011	1401	1	0	1	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	a0012	1401	1	1	0	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	a0013	1401	1	0	0	0	0	1	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	a0014	1401	1	0	0	1	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	a0015	1401	1	0	0	0	0	1	copy fasta	DISP2	chr15	40353219	40383621