JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DISP2_chr15_40353219_40383621	0/0	a0016	1401	1	0	1	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	a0017	1401	1	0	0	1	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	a0018	1401	1	0	0	1	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	a0019	1401	1	1	0	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	a0020	1401	1	1	0	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	a0021	1401	1	0	0	1	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	a0022	1401	1	0	0	1	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	a0023	1401	1	1	0	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	a0024	1401	1	1	0	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	a0025	1401	1	1	0	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	a0026	1401	1	0	0	0	0	1	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	a0027	1401	1	0	1	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	a0028	1401	1	1	0	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP3_chr1_11474155_11542551	1/1	a0001	1392	100	29	7	55	0	7	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	a0002	1392	75	5	4	54	1	11	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	a0003	1392	68	2	16	38	6	6	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	a0004	1392	58	35	7	8	1	7	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	a0005	1392	12	0	3	6	0	3	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	a0006	1392	9	0	7	0	0	2	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	a0007	1392	5	4	1	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	a0008	1392	5	0	0	5	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	a0009	1392	4	4	0	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	a0010	1392	4	0	4	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	a0011	1392	2	2	0	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	a0012	1392	2	2	0	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	a0013	1392	2	0	0	0	2	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	a0014	1392	2	1	1	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	a0015	1392	1	1	0	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	a0016	1392	1	0	0	1	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	a0017	1392	1	0	1	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	a0018	1392	1	0	1	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	a0019	1392	1	0	0	1	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	a0020	1392	1	1	0	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	a0021	1392	1	0	1	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	a0022	1392	1	0	0	0	0	1	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	a0023	1392	1	0	1	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	a0024	1392	1	0	0	0	0	1	copy fasta	DISP3	chr1	11474155	11542551
DIXDC1_chr11_111932343_112027653	1/1	a0001	683	266	84	44	111	4	21	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	a0002	683	7	7	0	0	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	a0003	683	2	0	0	0	0	2	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	a0004	683	1	1	0	0	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	a0005	683	1	0	0	1	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	a0006	11	1	0	0	0	0	1	copy fasta	DIXDC1	chr11	111932343	112027653
DKC1_chrX_154757864_154782689	1/1	a0001	514	284	70	58	115	9	30	copy fasta	DKC1	chrX	154757864	154782689
DKC1_chrX_154757864_154782689	0/0	a0002	515	3	0	2	0	0	1	copy fasta	DKC1	chrX	154757864	154782689
DKC1_chrX_154757864_154782689	0/0	a0003	514	2	2	0	0	0	0	copy fasta	DKC1	chrX	154757864	154782689
DKK1_chr10_52309281_52322657	1/1	a0001	266	407	93	69	186	13	44	copy fasta	DKK1	chr10	52309281	52322657
DKK1_chr10_52309281_52322657	0/0	a0002	266	2	1	1	0	0	0	copy fasta	DKK1	chr10	52309281	52322657
DKK1_chr10_52309281_52322657	0/0	a0003	266	1	0	0	0	1	0	copy fasta	DKK1	chr10	52309281	52322657
DKK2_chr4_106916802_107041313	1/1	a0001	259	174	66	29	48	8	21	copy fasta	DKK2	chr4	106916802	107041313