JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DKK2_chr4_106916802_107041313	0/0	a0002	259	39	0	12	22	2	3	copy fasta	DKK2	chr4	106916802	107041313
DKK2_chr4_106916802_107041313	0/0	a0003	259	2	0	0	2	0	0	copy fasta	DKK2	chr4	106916802	107041313
DKK2_chr4_106916802_107041313	0/0	a0004	259	1	0	1	0	0	0	copy fasta	DKK2	chr4	106916802	107041313
DKK2_chr4_106916802_107041313	0/0	a0005	259	1	0	0	1	0	0	copy fasta	DKK2	chr4	106916802	107041313
DKK2_chr4_106916802_107041313	0/0	a0006	259	1	0	0	1	0	0	copy fasta	DKK2	chr4	106916802	107041313
DKK3_chr11_11958036_12013626	0/1	a0001	350	310	60	53	142	15	39	copy fasta	DKK3	chr11	11958036	12013626
DKK3_chr11_11958036_12013626	1/0	a0002	350	88	22	13	44	1	7	copy fasta	DKK3	chr11	11958036	12013626
DKK3_chr11_11958036_12013626	0/0	a0003	350	7	7	0	0	0	0	copy fasta	DKK3	chr11	11958036	12013626
DKK3_chr11_11958036_12013626	0/0	a0004	350	4	2	2	0	0	0	copy fasta	DKK3	chr11	11958036	12013626
DKK3_chr11_11958036_12013626	0/0	a0005	350	3	3	0	0	0	0	copy fasta	DKK3	chr11	11958036	12013626
DKK3_chr11_11958036_12013626	0/0	a0006	350	1	1	0	0	0	0	copy fasta	DKK3	chr11	11958036	12013626
DKK3_chr11_11958036_12013626	0/0	a0007	350	1	0	0	1	0	0	copy fasta	DKK3	chr11	11958036	12013626
DKK3_chr11_11958036_12013626	0/0	a0008	350	1	0	0	1	0	0	copy fasta	DKK3	chr11	11958036	12013626
DKK3_chr11_11958036_12013626	0/0	a0009	350	1	1	0	0	0	0	copy fasta	DKK3	chr11	11958036	12013626
DKK4_chr8_42369063_42382229	1/1	a0001	224	377	95	56	167	12	45	copy fasta	DKK4	chr8	42369063	42382229
DKK4_chr8_42369063_42382229	0/0	a0002	224	1	0	0	1	0	0	copy fasta	DKK4	chr8	42369063	42382229
DKK4_chr8_42369063_42382229	0/0	a0003	224	1	1	0	0	0	0	copy fasta	DKK4	chr8	42369063	42382229
DKK4_chr8_42369063_42382229	0/0	a0004	224	1	0	0	0	0	1	copy fasta	DKK4	chr8	42369063	42382229
DKKL1_chr19_49358877_49380116	1/0	a0001	242	151	24	37	71	6	12	copy fasta	DKKL1	chr19	49358877	49380116
DKKL1_chr19_49358877_49380116	0/1	a0002	242	114	16	15	62	4	16	copy fasta	DKKL1	chr19	49358877	49380116
DKKL1_chr19_49358877_49380116	0/0	a0003	242	71	20	10	33	3	5	copy fasta	DKKL1	chr19	49358877	49380116
DKKL1_chr19_49358877_49380116	0/0	a0004	242	19	18	1	0	0	0	copy fasta	DKKL1	chr19	49358877	49380116
DKKL1_chr19_49358877_49380116	0/0	a0005	242	18	5	5	4	0	4	copy fasta	DKKL1	chr19	49358877	49380116
DKKL1_chr19_49358877_49380116	0/0	a0006	242	10	8	2	0	0	0	copy fasta	DKKL1	chr19	49358877	49380116
DKKL1_chr19_49358877_49380116	0/0	a0007	242	5	0	0	5	0	0	copy fasta	DKKL1	chr19	49358877	49380116
DKKL1_chr19_49358877_49380116	0/0	a0008	242	5	2	2	0	1	0	copy fasta	DKKL1	chr19	49358877	49380116
DKKL1_chr19_49358877_49380116	0/0	a0009	242	1	1	0	0	0	0	copy fasta	DKKL1	chr19	49358877	49380116
DKKL1_chr19_49358877_49380116	0/0	a0010	242	1	0	0	0	0	1	copy fasta	DKKL1	chr19	49358877	49380116
DKKL1_chr19_49358877_49380116	0/0	a0011	242	1	0	0	1	0	0	copy fasta	DKKL1	chr19	49358877	49380116
DLAT_chr11_112020408_112069404	1/1	a0001	647	129	11	30	62	8	16	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	a0002	647	115	9	23	68	2	13	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	a0003	647	52	46	6	0	0	0	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	a0004	647	15	15	0	0	0	0	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	a0005	647	12	11	1	0	0	0	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	a0006	647	5	0	0	5	0	0	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	a0007	647	2	2	0	0	0	0	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	a0008	647	2	0	2	0	0	0	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	a0009	647	1	0	1	0	0	0	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	a0010	647	1	0	0	0	0	1	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	a0011	647	1	0	1	0	0	0	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	a0012	647	1	0	0	1	0	0	copy fasta	DLAT	chr11	112020408	112069404
DLC1_chr8_13078361_13519851	0/0	a0001	1528	69	26	12	7	6	18	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/1	a0002	1528	45	15	9	8	4	8	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	a0003	1528	18	1	5	11	0	1	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	a0004	1528	15	0	5	9	0	1	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	a0005	1528	13	2	2	6	0	3	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	a0006	1528	12	9	1	0	0	2	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	a0007	1528	10	4	1	5	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	1/0	a0008	1528	6	5	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	a0009	1528	5	3	1	0	0	1	copy fasta	DLC1	chr8	13078361	13519851