JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DLC1_chr8_13078361_13519851	0/0	a0010	1528	3	0	2	0	0	1	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	a0011	1528	2	2	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	a0012	1528	2	2	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	a0013	1528	2	1	1	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	a0014	1528	1	0	1	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	a0015	1528	1	0	0	0	0	1	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	a0016	1528	1	0	1	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	a0017	1528	1	0	1	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	a0018	1528	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	a0019	1528	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	a0020	1528	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	a0021	1528	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	a0022	1528	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	a0023	1528	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLD_chr7_107886183_107926198	1/1	a0001	509	398	94	75	175	16	36	copy fasta	DLD	chr7	107886183	107926198
DLD_chr7_107886183_107926198	0/0	a0002	509	2	2	0	0	0	0	copy fasta	DLD	chr7	107886183	107926198
DLD_chr7_107886183_107926198	0/0	a0003	509	2	2	0	0	0	0	copy fasta	DLD	chr7	107886183	107926198
DLD_chr7_107886183_107926198	0/0	a0004	509	1	0	0	1	0	0	copy fasta	DLD	chr7	107886183	107926198
DLD_chr7_107886183_107926198	0/0	a0005	509	1	0	1	0	0	0	copy fasta	DLD	chr7	107886183	107926198
DLD_chr7_107886183_107926198	0/0	a0006	509	1	0	0	0	0	1	copy fasta	DLD	chr7	107886183	107926198
DLD_chr7_107886183_107926198	0/0	a0007	509	1	0	0	0	0	1	copy fasta	DLD	chr7	107886183	107926198
DLEC1_chr3_38034208_38129025	0/0	a0001	1755	129	32	25	55	6	11	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	a0002	1755	123	26	24	50	5	18	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	a0003	1755	7	5	2	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	a0004	1755	5	0	0	5	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	a0005	1755	4	1	1	1	1	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	a0006	1755	4	0	0	4	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	a0007	1755	3	3	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	a0008	1755	2	0	0	2	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	a0009	1755	2	0	0	2	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	a0010	1755	1	0	1	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	a0011	1755	1	0	0	1	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	a0012	1755	1	1	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	a0013	1755	1	1	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	a0014	1755	1	1	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	a0015	1755	1	0	0	1	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	a0016	1755	1	1	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	a0017	1755	1	0	1	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	a0018	1755	1	1	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	a0019	1755	1	1	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	a0020	1755	1	1	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	a0021	1755	1	1	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	a0022	1755	1	1	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	a0023	1755	1	0	0	1	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	a0024	1755	1	1	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	a0025	1755	1	0	1	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	a0026	1755	1	1	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	a0027	1755	1	0	0	0	0	1	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	a0028	1755	1	0	1	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEU7_chr13_50817905_50848692	1/0	a0001	221	316	85	64	117	11	38	copy fasta	DLEU7	chr13	50817905	50848692