JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DLEU7_chr13_50817905_50848692	0/1	a0002	221	100	10	16	63	3	7	copy fasta	DLEU7	chr13	50817905	50848692
DLEU7_chr13_50817905_50848692	0/0	a0003	221	13	0	0	13	0	0	copy fasta	DLEU7	chr13	50817905	50848692
DLEU7_chr13_50817905_50848692	0/0	a0004	221	1	1	0	0	0	0	copy fasta	DLEU7	chr13	50817905	50848692
DLEU7_chr13_50817905_50848692	0/0	a0005	221	1	0	0	0	0	1	copy fasta	DLEU7	chr13	50817905	50848692
DLEU7_chr13_50817905_50848692	0/0	a0006	221	1	0	0	1	0	0	copy fasta	DLEU7	chr13	50817905	50848692
DLG1_chr3_197037560_197303612	1/0	a0001	893	282	81	55	106	13	26	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	a0002	893	35	2	7	16	1	9	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	a0003	893	3	0	3	0	0	0	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	a0004	893	2	0	0	0	1	1	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	a0005	893	2	0	2	0	0	0	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	a0006	893	1	0	0	0	1	0	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/1	a0007	893	1	0	0	0	0	0	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	a0008	893	1	0	0	1	0	0	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	a0009	893	1	0	1	0	0	0	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	a0010	893	1	0	0	0	0	1	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	a0011	893	1	1	0	0	0	0	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	a0012	893	1	0	0	0	0	1	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	a0013	893	1	0	0	1	0	0	copy fasta	DLG1	chr3	197037560	197303612
DLG2_chr11_83450173_85632344	0/0	a0001	975	14	12	2	0	0	0	copy fasta	DLG2	chr11	83450173	85632344
DLG3_chrX_70439835_70510490	1/1	a0001	817	271	70	43	115	11	30	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	a0002	86	1	0	0	1	0	0	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	a0003	817	1	0	1	0	0	0	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	a0004	335	1	0	0	1	0	0	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	a0005	420	1	0	0	1	0	0	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	a0006	420	1	0	0	1	0	0	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	a0007	87	1	0	0	1	0	0	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	a0008	284	1	0	0	1	0	0	copy fasta	DLG3	chrX	70439835	70510490
DLG4_chr17_7182187_7222627	0/0	a0001	724	373	94	76	143	18	42	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	a0002	724	2	0	2	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	a0003	724	1	0	0	1	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG5_chr10_77785791_77931755	0/0	a0001	1919	269	70	51	107	8	33	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	a0002	1919	33	4	2	27	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	a0003	1919	5	2	2	1	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	a0004	1919	5	5	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	a0005	1919	4	4	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/1	a0006	1919	2	0	1	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	a0007	1919	1	0	0	1	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	a0008	1919	1	0	0	1	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	a0009	1919	1	0	0	0	0	1	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	a0010	1919	1	0	0	1	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	a0011	1919	1	1	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	a0012	1919	1	0	0	1	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	a0013	1919	1	0	0	1	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	a0014	1919	1	0	0	1	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	a0015	1919	1	1	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	a0016	1919	1	0	0	1	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	a0017	1919	1	0	0	1	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	a0018	1919	1	1	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	a0019	1919	1	0	0	1	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLGAP1_chr18_3491032_4460307	0/0	a0001	977	78	53	12	4	3	6	copy fasta	DLGAP1	chr18	3491032	4460307