JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DLGAP1_chr18_3491032_4460307	0/0	a0002	977	1	0	0	0	1	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	a0003	977	1	1	0	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP2_chr8_732628_1713476	0/0	a0001	1055	21	13	4	2	0	2	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	a0002	1055	16	7	3	2	0	4	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	a0003	1055	2	1	1	0	0	0	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	a0004	1055	1	1	0	0	0	0	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP3_chr1_34860436_34934650	1/0	a0001	979	263	93	58	69	10	32	copy fasta	DLGAP3	chr1	34860436	34934650
DLGAP3_chr1_34860436_34934650	0/1	a0002	979	1	0	0	0	0	0	copy fasta	DLGAP3	chr1	34860436	34934650
DLGAP3_chr1_34860436_34934650	0/0	a0003	979	1	1	0	0	0	0	copy fasta	DLGAP3	chr1	34860436	34934650
DLGAP3_chr1_34860436_34934650	0/0	a0004	979	1	0	0	1	0	0	copy fasta	DLGAP3	chr1	34860436	34934650
DLGAP4_chr20_36301339_36533633	1/1	a0001	992	129	55	29	29	3	11	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	a0002	992	8	0	0	3	0	5	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	a0003	992	3	0	1	0	0	2	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	a0004	992	1	0	0	0	1	0	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	a0005	992	1	1	0	0	0	0	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	a0006	992	1	1	0	0	0	0	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	a0007	992	1	1	0	0	0	0	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP5_chr14_55143135_55196585	1/1	a0001	846	188	15	37	98	10	26	copy fasta	DLGAP5	chr14	55143135	55196585
DLGAP5_chr14_55143135_55196585	0/0	a0002	846	115	53	15	39	0	8	copy fasta	DLGAP5	chr14	55143135	55196585
DLGAP5_chr14_55143135_55196585	0/0	a0003	846	41	16	5	14	0	6	copy fasta	DLGAP5	chr14	55143135	55196585
DLGAP5_chr14_55143135_55196585	0/0	a0004	846	8	0	0	8	0	0	copy fasta	DLGAP5	chr14	55143135	55196585
DLGAP5_chr14_55143135_55196585	0/0	a0005	846	6	4	2	0	0	0	copy fasta	DLGAP5	chr14	55143135	55196585
DLGAP5_chr14_55143135_55196585	0/0	a0006	495	1	0	0	1	0	0	copy fasta	DLGAP5	chr14	55143135	55196585
DLGAP5_chr14_55143135_55196585	0/0	a0007	846	1	0	0	1	0	0	copy fasta	DLGAP5	chr14	55143135	55196585
DLGAP5_chr14_55143135_55196585	0/0	a0008	846	1	0	0	1	0	0	copy fasta	DLGAP5	chr14	55143135	55196585
DLGAP5_chr14_55143135_55196585	0/0	a0009	846	1	0	1	0	0	0	copy fasta	DLGAP5	chr14	55143135	55196585
DLK1_chr14_100721892_100743224	0/1	a0001	383	372	86	69	159	14	43	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	a0002	383	20	0	0	20	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	a0003	383	15	0	5	8	1	1	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	a0004	383	6	6	0	0	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	a0005	383	4	3	1	0	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	a0006	383	2	2	0	0	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	1/0	a0007	383	2	1	0	0	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	a0008	383	1	0	1	0	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	a0009	383	1	0	0	1	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	a0010	383	1	0	0	0	1	0	copy fasta	DLK1	chr14	100721892	100743224
DLK2_chr6_43445352_43460548	1/1	a0001	383	355	92	66	154	9	32	copy fasta	DLK2	chr6	43445352	43460548
DLK2_chr6_43445352_43460548	0/0	a0002	383	5	1	0	0	1	3	copy fasta	DLK2	chr6	43445352	43460548
DLK2_chr6_43445352_43460548	0/0	a0003	383	4	4	0	0	0	0	copy fasta	DLK2	chr6	43445352	43460548
DLK2_chr6_43445352_43460548	0/0	a0004	383	3	0	0	3	0	0	copy fasta	DLK2	chr6	43445352	43460548
DLK2_chr6_43445352_43460548	0/0	a0005	383	1	0	0	1	0	0	copy fasta	DLK2	chr6	43445352	43460548
DLK2_chr6_43445352_43460548	0/0	a0006	383	1	1	0	0	0	0	copy fasta	DLK2	chr6	43445352	43460548
DLK2_chr6_43445352_43460548	0/0	a0007	383	1	0	0	0	0	1	copy fasta	DLK2	chr6	43445352	43460548
DLL1_chr6_170277206_170296078	0/1	a0001	723	399	85	80	172	18	43	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	a0002	723	3	0	0	3	0	0	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	a0003	723	2	2	0	0	0	0	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	a0004	723	1	1	0	0	0	0	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	a0005	723	1	1	0	0	0	0	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	a0006	723	1	0	1	0	0	0	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	a0007	723	1	0	0	1	0	0	copy fasta	DLL1	chr6	170277206	170296078