JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DLL1_chr6_170277206_170296078	0/0	a0008	723	1	0	1	0	0	0	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	a0009	723	1	0	0	1	0	0	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	a0010	723	1	1	0	0	0	0	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	a0011	723	1	0	0	0	0	1	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	a0012	723	1	0	0	1	0	0	copy fasta	DLL1	chr6	170277206	170296078
DLL3_chr19_39493947_39513469	0/0	a0001	587	169	35	20	96	5	13	copy fasta	DLL3	chr19	39493947	39513469
DLL3_chr19_39493947_39513469	1/1	a0002	587	125	13	24	70	1	15	copy fasta	DLL3	chr19	39493947	39513469
DLL3_chr19_39493947_39513469	0/0	a0003	587	101	27	25	29	6	14	copy fasta	DLL3	chr19	39493947	39513469
DLL3_chr19_39493947_39513469	0/0	a0004	587	17	12	5	0	0	0	copy fasta	DLL3	chr19	39493947	39513469
DLL3_chr19_39493947_39513469	0/0	a0005	333	8	0	0	8	0	0	copy fasta	DLL3	chr19	39493947	39513469
DLL3_chr19_39493947_39513469	0/0	a0006	587	3	3	0	0	0	0	copy fasta	DLL3	chr19	39493947	39513469
DLL3_chr19_39493947_39513469	0/0	a0007	587	1	1	0	0	0	0	copy fasta	DLL3	chr19	39493947	39513469
DLL3_chr19_39493947_39513469	0/0	a0008	587	1	0	0	1	0	0	copy fasta	DLL3	chr19	39493947	39513469
DLL3_chr19_39493947_39513469	0/0	a0009	333	1	0	0	1	0	0	copy fasta	DLL3	chr19	39493947	39513469
DLL3_chr19_39493947_39513469	0/0	a0010	587	1	1	0	0	0	0	copy fasta	DLL3	chr19	39493947	39513469
DLL3_chr19_39493947_39513469	0/0	a0011	587	1	0	0	1	0	0	copy fasta	DLL3	chr19	39493947	39513469
DLL4_chr15_40924340_40944073	1/1	a0001	685	361	94	66	139	16	44	copy fasta	DLL4	chr15	40924340	40944073
DLL4_chr15_40924340_40944073	0/0	a0002	685	5	0	0	5	0	0	copy fasta	DLL4	chr15	40924340	40944073
DLL4_chr15_40924340_40944073	0/0	a0003	685	2	0	0	2	0	0	copy fasta	DLL4	chr15	40924340	40944073
DLL4_chr15_40924340_40944073	0/0	a0004	685	1	0	0	0	0	1	copy fasta	DLL4	chr15	40924340	40944073
DLL4_chr15_40924340_40944073	0/0	a0005	685	1	0	0	0	0	1	copy fasta	DLL4	chr15	40924340	40944073
DLST_chr14_74876916_74908743	1/1	a0001	453	384	87	72	172	10	41	copy fasta	DLST	chr14	74876916	74908743
DLST_chr14_74876916_74908743	0/0	a0002	453	3	1	0	1	0	1	copy fasta	DLST	chr14	74876916	74908743
DLST_chr14_74876916_74908743	0/0	a0003	453	3	3	0	0	0	0	copy fasta	DLST	chr14	74876916	74908743
DLST_chr14_74876916_74908743	0/0	a0004	453	1	1	0	0	0	0	copy fasta	DLST	chr14	74876916	74908743
DLST_chr14_74876916_74908743	0/0	a0005	453	1	0	0	1	0	0	copy fasta	DLST	chr14	74876916	74908743
DLX1_chr2_172080507_172094674	1/1	a0001	255	424	94	78	188	18	44	copy fasta	DLX1	chr2	172080507	172094674
DLX2_chr2_172094438_172107900	1/1	a0001	328	377	95	70	152	14	44	copy fasta	DLX2	chr2	172094438	172107900
DLX2_chr2_172094438_172107900	0/0	a0002	329	12	0	2	10	0	0	copy fasta	DLX2	chr2	172094438	172107900
DLX2_chr2_172094438_172107900	0/0	a0003	328	1	1	0	0	0	0	copy fasta	DLX2	chr2	172094438	172107900
DLX3_chr17_49985005_50000224	1/1	a0001	287	433	93	83	198	16	41	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	a0002	287	1	0	0	1	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	a0003	287	1	0	0	0	0	1	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	a0004	287	1	0	1	0	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	a0005	287	1	1	0	0	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	a0006	287	1	0	0	1	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX4_chr17_49964190_49979959	1/1	a0001	240	392	98	60	174	12	46	copy fasta	DLX4	chr17	49964190	49979959
DLX4_chr17_49964190_49979959	0/0	a0002	240	11	2	5	0	2	2	copy fasta	DLX4	chr17	49964190	49979959
DLX4_chr17_49964190_49979959	0/0	a0003	240	1	0	1	0	0	0	copy fasta	DLX4	chr17	49964190	49979959
DLX5_chr7_97015396_97029831	1/1	a0001	289	447	95	76	210	16	48	copy fasta	DLX5	chr7	97015396	97029831
DLX5_chr7_97015396_97029831	0/0	a0002	289	1	1	0	0	0	0	copy fasta	DLX5	chr7	97015396	97029831
DLX6_chr7_97000553_97016040	1/1	a0001	293	362	85	63	168	9	35	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	a0002	294	40	3	6	13	5	13	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	a0003	293	3	0	0	3	0	0	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	a0004	293	1	0	1	0	0	0	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	a0005	289	1	0	0	1	0	0	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	a0006	301	1	0	0	1	0	0	copy fasta	DLX6	chr7	97000553	97016040
DMAC1_chr9_7791500_7804778	1/1	a0001	112	300	72	38	141	11	36	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	a0002	112	172	19	46	86	7	14	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	a0003	112	1	1	0	0	0	0	copy fasta	DMAC1	chr9	7791500	7804778