JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DMAC1_chr9_7791500_7804778	0/0	a0004	112	1	0	0	1	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC2L_chr14_50307324_50332957	0/1	a0001	200	224	55	44	97	7	20	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	1/0	a0002	200	174	34	31	75	9	24	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	a0003	200	1	0	1	0	0	0	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	a0004	200	1	1	0	0	0	0	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2_chr19_41426318_41444912	1/1	a0001	257	206	44	35	80	12	33	copy fasta	DMAC2	chr19	41426318	41444912
DMAC2_chr19_41426318_41444912	0/0	a0002	257	181	24	35	101	4	17	copy fasta	DMAC2	chr19	41426318	41444912
DMAC2_chr19_41426318_41444912	0/0	a0003	257	34	29	2	3	0	0	copy fasta	DMAC2	chr19	41426318	41444912
DMAC2_chr19_41426318_41444912	0/0	a0004	257	2	2	0	0	0	0	copy fasta	DMAC2	chr19	41426318	41444912
DMAC2_chr19_41426318_41444912	0/0	a0005	257	1	1	0	0	0	0	copy fasta	DMAC2	chr19	41426318	41444912
DMAC2_chr19_41426318_41444912	0/0	a0006	257	1	0	1	0	0	0	copy fasta	DMAC2	chr19	41426318	41444912
DMAC2_chr19_41426318_41444912	0/0	a0007	257	1	0	1	0	0	0	copy fasta	DMAC2	chr19	41426318	41444912
DMAP1_chr1_44208471_44225673	1/1	a0001	467	401	89	68	182	16	44	copy fasta	DMAP1	chr1	44208471	44225673
DMAP1_chr1_44208471_44225673	0/0	a0002	467	2	2	0	0	0	0	copy fasta	DMAP1	chr1	44208471	44225673
DMAP1_chr1_44208471_44225673	0/0	a0003	358	1	0	0	1	0	0	copy fasta	DMAP1	chr1	44208471	44225673
DMAP1_chr1_44208471_44225673	0/0	a0004	467	1	0	0	1	0	0	copy fasta	DMAP1	chr1	44208471	44225673
DMAP1_chr1_44208471_44225673	0/0	a0005	467	1	0	0	1	0	0	copy fasta	DMAP1	chr1	44208471	44225673
DMAP1_chr1_44208471_44225673	0/0	a0006	467	1	1	0	0	0	0	copy fasta	DMAP1	chr1	44208471	44225673
DMAP1_chr1_44208471_44225673	0/0	a0007	467	1	0	0	1	0	0	copy fasta	DMAP1	chr1	44208471	44225673
DMBT1_chr10_122555754_122648736	0/0	a0001	2413	40	2	17	12	4	5	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0002	2026	19	0	0	18	0	1	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0003	1656	16	0	0	16	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0004	2155	16	0	2	13	0	1	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0005	2542	13	5	0	5	0	3	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0006	2284	11	0	0	4	1	6	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0007	2155	10	0	4	1	2	3	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0008	1785	8	0	0	8	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0009	2284	7	2	4	0	1	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0010	2155	7	0	1	6	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/1	a0011	1785	6	0	1	1	1	2	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0012	2413	6	0	1	4	0	1	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0013	2413	5	0	0	5	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0014	2284	5	0	0	4	1	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0015	1656	5	0	0	0	0	5	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0016	2026	4	3	1	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0017	2155	3	3	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0018	2155	3	3	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0019	1656	3	0	0	3	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0020	2155	3	3	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0021	2413	3	0	0	0	0	3	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0022	2155	3	2	1	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0023	1656	3	3	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0024	2542	2	1	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0025	2542	2	2	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0026	2155	2	1	1	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0027	2155	2	0	0	0	0	2	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0028	2155	2	2	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0029	1656	2	0	0	2	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0030	2413	2	0	2	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0031	2284	2	0	0	1	0	1	copy fasta	DMBT1	chr10	122555754	122648736