JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DMBT1_chr10_122555754_122648736	0/0	a0032	2155	2	2	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0033	2542	2	1	0	0	1	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0034	2413	2	2	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0035	2413	2	2	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0036	2155	2	2	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0037	1785	1	0	0	0	1	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	1/0	a0038	2542	1	0	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0039	2413	1	0	1	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0040	2155	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0041	2413	1	0	1	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0042	2284	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0043	2413	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0044	2155	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0045	2155	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0046	2413	1	0	0	0	0	1	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0047	2155	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0048	2155	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0049	2026	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0050	2026	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0051	2026	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0052	2155	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0053	2155	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0054	2281	1	0	0	0	0	1	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0055	2413	1	0	1	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0056	2155	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0057	2155	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0058	2155	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0059	2155	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0060	2413	1	0	0	0	0	1	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0061	505	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0062	2413	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0063	2155	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0064	2155	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0065	2043	1	0	0	0	1	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0066	1656	1	0	1	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0067	2542	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0068	2413	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0069	2155	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0070	2542	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0071	2413	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0072	2413	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0073	2155	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0074	2284	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0075	2155	1	0	1	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0076	2542	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0077	2413	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0078	1730	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0079	2155	1	0	1	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0080	2542	1	0	0	0	1	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0081	2284	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736