Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ADGRE1_chr19_6882579_6945450	0/0	a0031	886	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0032	886	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0033	886	1	0	0	0	1	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0034	886	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0035	886	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0036	886	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0037	886	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0038	886	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0039	886	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0040	886	1	0	0	0	0	1	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0041	886	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0042	886	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0043	886	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0044	886	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0045	886	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0046	886	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0047	886	1	0	1	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0048	886	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0049	886	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0050	886	1	0	0	1	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0051	886	1	0	1	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0052	886	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0053	886	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0054	886	1	0	0	1	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0055	886	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0056	886	1	0	0	1	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0057	886	1	0	0	1	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0058	886	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0059	886	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0060	886	1	0	0	0	0	1	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0061	886	1	0	1	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0062	886	1	0	0	1	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0063	886	1	0	1	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0064	886	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0065	886	1	0	1	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	a0066	886	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE2_chr19_14727392_14783560	0/0	a0001	823	77	13	23	25	4	12	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	a0002	823	48	24	7	7	2	8	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/1	a0003	823	40	3	11	19	0	6	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	a0004	823	10	10	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	a0005	823	7	0	0	4	0	3	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	a0006	823	5	5	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	a0007	823	4	4	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	a0008	823	2	2	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	a0009	823	2	2	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	a0010	823	2	2	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	a0011	823	2	2	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	a0012	823	2	0	2	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	a0013	145	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	a0014	823	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560