JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DMBT1_chr10_122555754_122648736	0/0	a0082	2155	1	0	0	0	0	1	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0083	2413	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0084	2413	1	0	1	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0085	1656	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0086	2413	1	0	1	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0087	2026	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0088	2155	1	0	1	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0089	2155	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0090	1785	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0091	2155	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0092	2155	1	0	0	0	0	1	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	a0093	2155	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBX1_chr1_46484836_46521216	1/1	a0001	377	411	80	71	202	16	40	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	a0002	377	12	12	0	0	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	a0003	377	2	2	0	0	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	a0004	377	1	0	0	0	0	1	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	a0005	377	1	0	1	0	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	a0006	377	1	1	0	0	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	a0007	377	1	1	0	0	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	a0008	377	1	0	0	0	0	1	copy fasta	DMBX1	chr1	46484836	46521216
DMC1_chr22_38513948_38575183	1/1	a0001	340	307	73	56	140	8	28	copy fasta	DMC1	chr22	38513948	38575183
DMC1_chr22_38513948_38575183	0/0	a0002	340	13	13	0	0	0	0	copy fasta	DMC1	chr22	38513948	38575183
DMC1_chr22_38513948_38575183	0/0	a0003	340	2	2	0	0	0	0	copy fasta	DMC1	chr22	38513948	38575183
DMC1_chr22_38513948_38575183	0/0	a0004	340	2	0	0	2	0	0	copy fasta	DMC1	chr22	38513948	38575183
DMD_chrX_31114222_33216549	0/0	a0001	3685	31	1	3	16	3	8	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	a0002	3685	18	10	4	4	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	a0003	3685	12	6	2	3	0	1	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	a0004	3685	10	0	5	5	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	a0005	3685	8	4	2	1	1	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	a0006	3685	5	0	0	4	0	1	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	a0007	3685	4	0	0	4	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	a0008	3685	3	1	2	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	a0009	3685	2	0	1	0	0	1	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	a0010	3685	2	2	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	a0011	3685	2	0	0	1	0	1	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	a0012	3685	2	0	0	1	0	1	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	a0013	3685	2	0	1	0	0	1	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	a0014	3685	2	0	0	0	0	2	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	a0015	3685	2	0	0	0	1	1	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	a0016	3685	1	0	0	1	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	a0017	3685	1	1	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	a0018	3685	1	1	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	a0019	3685	1	0	0	0	0	1	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	a0020	3685	1	0	1	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	a0021	3685	1	0	0	1	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	a0022	3685	1	1	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	a0023	3685	1	0	1	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	a0024	3685	1	0	0	1	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	a0025	3685	1	0	0	1	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	a0026	3685	1	0	0	1	0	0	copy fasta	DMD	chrX	31114222	33216549