JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DMD_chrX_31114222_33216549	0/0	a0027	3685	1	1	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	a0028	3685	1	1	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	a0029	3685	1	1	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	a0030	3685	1	0	0	1	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	a0031	3685	1	0	0	1	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	a0032	3685	1	1	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	a0033	3685	1	0	0	1	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	a0034	3685	1	0	0	1	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	a0035	415	1	0	0	1	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	a0036	259	1	0	0	1	0	0	copy fasta	DMD	chrX	31114222	33216549
DMGDH_chr5_78992564_79074674	0/0	a0001	866	214	48	30	107	6	23	copy fasta	DMGDH	chr5	78992564	79074674
DMGDH_chr5_78992564_79074674	0/1	a0002	866	76	17	14	31	5	8	copy fasta	DMGDH	chr5	78992564	79074674
DMGDH_chr5_78992564_79074674	1/0	a0003	866	53	6	16	19	1	10	copy fasta	DMGDH	chr5	78992564	79074674
DMGDH_chr5_78992564_79074674	0/0	a0004	866	22	20	0	0	1	1	copy fasta	DMGDH	chr5	78992564	79074674
DMGDH_chr5_78992564_79074674	0/0	a0005	866	2	2	0	0	0	0	copy fasta	DMGDH	chr5	78992564	79074674
DMGDH_chr5_78992564_79074674	0/0	a0006	285	1	0	0	1	0	0	copy fasta	DMGDH	chr5	78992564	79074674
DMGDH_chr5_78992564_79074674	0/0	a0007	866	1	0	1	0	0	0	copy fasta	DMGDH	chr5	78992564	79074674
DMGDH_chr5_78992564_79074674	0/0	a0008	866	1	1	0	0	0	0	copy fasta	DMGDH	chr5	78992564	79074674
DMGDH_chr5_78992564_79074674	0/0	a0009	866	1	0	0	0	1	0	copy fasta	DMGDH	chr5	78992564	79074674
DMGDH_chr5_78992564_79074674	0/0	a0010	866	1	0	1	0	0	0	copy fasta	DMGDH	chr5	78992564	79074674
DMKN_chr19_35492220_35518649	0/0	a0001	459	105	10	23	62	0	10	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/1	a0002	476	62	5	22	9	11	14	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0003	476	44	2	14	19	3	6	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0004	475	41	1	3	37	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0005	480	31	18	3	8	0	2	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0006	475	25	2	4	13	0	6	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0007	480	17	0	0	17	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0008	475	13	11	2	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0009	472	11	11	0	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0010	472	10	3	0	7	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0011	459	9	1	0	7	1	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0012	480	9	5	2	1	0	1	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0013	480	6	6	0	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0014	471	6	0	0	6	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0015	479	6	1	3	0	1	1	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0016	484	5	0	0	3	0	2	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0017	471	5	0	0	5	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0018	476	3	1	2	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0019	476	3	1	1	0	0	1	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0020	472	2	2	0	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0021	480	2	2	0	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0022	476	2	1	0	0	0	1	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0023	475	2	0	0	2	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0024	468	2	2	0	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0025	459	2	0	0	2	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	1/0	a0026	476	2	0	1	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0027	472	1	1	0	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0028	471	1	1	0	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0029	476	1	1	0	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0030	480	1	0	0	0	0	1	copy fasta	DMKN	chr19	35492220	35518649