JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DMKN_chr19_35492220_35518649	0/0	a0031	468	1	1	0	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0032	488	1	1	0	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0033	480	1	1	0	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0034	471	1	1	0	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0035	479	1	1	0	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0036	475	1	0	0	1	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0037	484	1	1	0	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0038	467	1	0	0	1	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0039	476	1	0	0	0	0	1	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0040	472	1	0	1	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0041	480	1	1	0	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0042	488	1	1	0	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	a0043	476	1	0	1	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMP1_chr4_87645280_87669357	1/0	a0001	513	260	68	50	99	11	31	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/1	a0002	513	141	21	21	84	3	11	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/0	a0003	513	19	0	2	17	0	0	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/0	a0004	513	4	3	1	0	0	0	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/0	a0005	513	3	3	0	0	0	0	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/0	a0006	513	1	1	0	0	0	0	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/0	a0007	513	1	0	0	1	0	0	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/0	a0008	513	1	0	0	1	0	0	copy fasta	DMP1	chr4	87645280	87669357
DMPK_chr19_45764717_45787490	1/1	a0001	629	332	81	64	143	13	29	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	a0002	629	73	3	16	41	3	10	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	a0003	629	3	0	1	0	0	2	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	a0004	629	2	2	0	0	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	a0005	629	2	1	1	0	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	a0006	635	1	0	0	1	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	a0007	629	1	0	0	0	0	1	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	a0008	629	1	0	0	1	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	a0009	629	1	1	0	0	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMRT1_chr9_836697_974090	1/1	a0001	373	221	79	49	58	12	21	copy fasta	DMRT1	chr9	836697	974090
DMRT1_chr9_836697_974090	0/0	a0002	373	75	8	14	43	1	9	copy fasta	DMRT1	chr9	836697	974090
DMRT1_chr9_836697_974090	0/0	a0003	373	8	7	1	0	0	0	copy fasta	DMRT1	chr9	836697	974090
DMRT1_chr9_836697_974090	0/0	a0004	373	1	0	0	0	1	0	copy fasta	DMRT1	chr9	836697	974090
DMRT1_chr9_836697_974090	0/0	a0005	373	1	0	0	1	0	0	copy fasta	DMRT1	chr9	836697	974090
DMRT2_chr9_1045357_1062552	1/1	a0001	561	223	72	44	83	12	10	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	a0002	561	178	11	27	113	4	23	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	a0003	561	57	6	2	35	1	13	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	a0004	561	7	7	0	0	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	a0005	561	6	0	1	1	1	3	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	a0006	561	3	0	3	0	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	a0007	561	2	0	0	2	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	a0008	561	2	1	1	0	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	a0009	561	1	1	0	0	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	a0010	561	1	0	0	0	0	1	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	a0011	561	1	0	1	0	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	a0012	561	1	0	1	0	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	a0013	561	1	0	0	1	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	a0014	561	1	0	0	1	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	a0015	561	1	1	0	0	0	0	copy fasta	DMRT2	chr9	1045357	1062552