JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DMRT2_chr9_1045357_1062552	0/0	a0016	561	1	1	0	0	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	a0017	561	1	0	0	1	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	a0018	561	1	0	0	1	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT3_chr9_971655_996732	1/0	a0001	472	241	34	50	115	11	30	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/1	a0002	472	127	41	18	56	5	6	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	a0003	472	29	2	8	14	2	3	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	a0004	472	22	0	3	18	0	1	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	a0005	472	13	12	1	0	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	a0006	472	5	5	0	0	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	a0007	472	4	1	1	2	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	a0008	472	4	0	0	4	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	a0009	472	3	0	0	3	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	a0010	472	3	0	0	3	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	a0011	472	2	0	2	0	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	a0012	472	1	0	1	0	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	a0013	472	1	1	0	0	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	a0014	472	1	0	0	1	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	a0015	472	1	0	0	1	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	a0016	472	1	0	0	1	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRTA1_chr9_22441824_22460740	1/1	a0001	504	403	94	65	180	16	46	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	a0002	504	2	0	0	2	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	a0003	504	1	1	0	0	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	a0004	504	1	0	1	0	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	a0005	504	1	1	0	0	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	a0006	504	1	1	0	0	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	a0007	504	1	1	0	0	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	a0008	504	1	0	1	0	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	a0009	504	1	0	1	0	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA2_chr1_50412550_50428443	1/1	a0001	542	248	82	49	74	8	33	copy fasta	DMRTA2	chr1	50412550	50428443
DMRTA2_chr1_50412550_50428443	0/0	a0002	540	54	5	9	30	4	6	copy fasta	DMRTA2	chr1	50412550	50428443
DMRTA2_chr1_50412550_50428443	0/0	a0003	542	3	2	0	0	0	1	copy fasta	DMRTA2	chr1	50412550	50428443
DMRTA2_chr1_50412550_50428443	0/0	a0004	542	3	1	2	0	0	0	copy fasta	DMRTA2	chr1	50412550	50428443
DMRTA2_chr1_50412550_50428443	0/0	a0005	542	1	0	0	1	0	0	copy fasta	DMRTA2	chr1	50412550	50428443
DMRTA2_chr1_50412550_50428443	0/0	a0006	540	1	0	0	1	0	0	copy fasta	DMRTA2	chr1	50412550	50428443
DMRTB1_chr1_53454399_53472488	1/1	a0001	342	324	86	45	152	11	28	copy fasta	DMRTB1	chr1	53454399	53472488
DMRTB1_chr1_53454399_53472488	0/0	a0002	344	56	6	8	31	3	8	copy fasta	DMRTB1	chr1	53454399	53472488
DMRTB1_chr1_53454399_53472488	0/0	a0003	340	3	0	0	3	0	0	copy fasta	DMRTB1	chr1	53454399	53472488
DMRTB1_chr1_53454399_53472488	0/0	a0004	344	2	2	0	0	0	0	copy fasta	DMRTB1	chr1	53454399	53472488
DMRTB1_chr1_53454399_53472488	0/0	a0005	342	2	0	0	2	0	0	copy fasta	DMRTB1	chr1	53454399	53472488
DMRTB1_chr1_53454399_53472488	0/0	a0006	342	2	2	0	0	0	0	copy fasta	DMRTB1	chr1	53454399	53472488
DMRTB1_chr1_53454399_53472488	0/0	a0007	342	1	0	0	1	0	0	copy fasta	DMRTB1	chr1	53454399	53472488
DMRTB1_chr1_53454399_53472488	0/0	a0008	342	1	0	0	1	0	0	copy fasta	DMRTB1	chr1	53454399	53472488
DMRTB1_chr1_53454399_53472488	0/0	a0009	342	1	0	1	0	0	0	copy fasta	DMRTB1	chr1	53454399	53472488
DMRTB1_chr1_53454399_53472488	0/0	a0010	342	1	1	0	0	0	0	copy fasta	DMRTB1	chr1	53454399	53472488
DMRTB1_chr1_53454399_53472488	0/0	a0011	342	1	1	0	0	0	0	copy fasta	DMRTB1	chr1	53454399	53472488
DMRTC1B_chrX_72771890_72853803	0/0	a0001	192	20	6	5	6	0	3	copy fasta	DMRTC1B	chrX	72771890	72853803
DMRTC1B_chrX_72771890_72853803	0/0	a0002	192	2	1	1	0	0	0	copy fasta	DMRTC1B	chrX	72771890	72853803
DMRTC1B_chrX_72771890_72853803	0/0	a0003	63	1	0	1	0	0	0	copy fasta	DMRTC1B	chrX	72771890	72853803
DMRTC1B_chrX_72771890_72853803	0/0	a0004	143	1	0	0	1	0	0	copy fasta	DMRTC1B	chrX	72771890	72853803
DMRTC1B_chrX_72771890_72853803	0/0	a0005	190	1	0	1	0	0	0	copy fasta	DMRTC1B	chrX	72771890	72853803