JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DMRTC1B_chrX_72771890_72853803	0/0	a0006	98	1	0	1	0	0	0	copy fasta	DMRTC1B	chrX	72771890	72853803
DMRTC1_chrX_72867025_72948837	0/0	a0001	192	54	9	5	25	4	11	copy fasta	DMRTC1	chrX	72867025	72948837
DMRTC2_chr19_41840042_41857333	1/1	a0001	367	397	84	74	182	16	39	copy fasta	DMRTC2	chr19	41840042	41857333
DMRTC2_chr19_41840042_41857333	0/0	a0002	367	2	0	0	2	0	0	copy fasta	DMRTC2	chr19	41840042	41857333
DMRTC2_chr19_41840042_41857333	0/0	a0003	367	1	0	0	0	0	1	copy fasta	DMRTC2	chr19	41840042	41857333
DMRTC2_chr19_41840042_41857333	0/0	a0004	367	1	0	0	1	0	0	copy fasta	DMRTC2	chr19	41840042	41857333
DMRTC2_chr19_41840042_41857333	0/0	a0005	367	1	0	0	1	0	0	copy fasta	DMRTC2	chr19	41840042	41857333
DMTF1_chr7_87147453_87201325	1/1	a0001	760	351	85	62	170	12	20	copy fasta	DMTF1	chr7	87147453	87201325
DMTF1_chr7_87147453_87201325	0/0	a0002	760	3	3	0	0	0	0	copy fasta	DMTF1	chr7	87147453	87201325
DMTF1_chr7_87147453_87201325	0/0	a0003	760	2	1	0	1	0	0	copy fasta	DMTF1	chr7	87147453	87201325
DMTF1_chr7_87147453_87201325	0/0	a0004	760	2	0	0	0	0	2	copy fasta	DMTF1	chr7	87147453	87201325
DMTF1_chr7_87147453_87201325	0/0	a0005	760	1	0	0	1	0	0	copy fasta	DMTF1	chr7	87147453	87201325
DMTF1_chr7_87147453_87201325	0/0	a0006	760	1	0	0	1	0	0	copy fasta	DMTF1	chr7	87147453	87201325
DMTF1_chr7_87147453_87201325	0/0	a0007	760	1	0	0	1	0	0	copy fasta	DMTF1	chr7	87147453	87201325
DMTF1_chr7_87147453_87201325	0/0	a0008	760	1	1	0	0	0	0	copy fasta	DMTF1	chr7	87147453	87201325
DMTN_chr8_22051814_22087525	1/1	a0001	405	312	89	64	105	16	36	copy fasta	DMTN	chr8	22051814	22087525
DMTN_chr8_22051814_22087525	0/0	a0002	405	5	5	0	0	0	0	copy fasta	DMTN	chr8	22051814	22087525
DMTN_chr8_22051814_22087525	0/0	a0003	405	3	0	0	3	0	0	copy fasta	DMTN	chr8	22051814	22087525
DMTN_chr8_22051814_22087525	0/0	a0004	405	2	1	1	0	0	0	copy fasta	DMTN	chr8	22051814	22087525
DMTN_chr8_22051814_22087525	0/0	a0005	405	1	0	1	0	0	0	copy fasta	DMTN	chr8	22051814	22087525
DMTN_chr8_22051814_22087525	0/0	a0006	405	1	1	0	0	0	0	copy fasta	DMTN	chr8	22051814	22087525
DMWD_chr19_45777947_45797845	1/1	a0001	674	433	83	79	203	17	49	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	a0002	674	3	0	1	0	1	1	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	a0003	674	3	3	0	0	0	0	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	a0004	674	1	0	0	1	0	0	copy fasta	DMWD	chr19	45777947	45797845
DMXL1_chr5_119066087_119254127	1/1	a0001	3048	163	62	37	27	11	24	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	a0002	3048	25	1	6	14	0	4	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	a0003	3048	6	1	5	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	a0004	3048	5	0	0	0	0	5	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	a0005	3048	4	4	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	a0006	3048	3	0	1	0	1	1	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	a0007	3048	3	3	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	a0008	3048	3	3	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	a0009	3048	3	3	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	a0010	3048	3	1	2	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	a0011	3048	2	2	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	a0012	3048	2	0	0	1	0	1	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	a0013	3048	2	2	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	a0014	3048	1	0	0	0	0	1	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	a0015	3048	1	0	0	0	0	1	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	a0016	3048	1	0	0	0	0	1	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	a0017	3048	1	0	1	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	a0018	3048	1	0	0	0	0	1	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	a0019	3048	1	0	0	1	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	a0020	3048	1	0	0	0	0	1	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	a0021	3048	1	1	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	a0022	3048	1	0	1	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	a0023	3048	1	0	0	1	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	a0024	3048	1	0	1	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	a0025	3048	1	1	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127