JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DMXL1_chr5_119066087_119254127	0/0	a0026	3048	1	1	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	a0027	3048	1	1	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL2_chr15_51442791_51627771	1/0	a0001	3058	154	39	22	80	0	12	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/1	a0002	3058	127	25	22	68	1	10	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	a0003	3058	30	6	14	1	2	7	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	a0004	3058	13	0	0	12	0	1	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	a0005	3058	7	7	0	0	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	a0006	3058	3	3	0	0	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	a0007	3058	2	2	0	0	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	a0008	3058	1	0	1	0	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	a0009	3058	1	0	0	1	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	a0010	3058	1	0	0	0	0	1	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	a0011	3058	1	0	1	0	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	a0012	3058	1	0	0	0	1	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	a0013	3058	1	1	0	0	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	a0014	3058	1	1	0	0	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	a0015	3058	1	0	0	1	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	a0016	3058	1	0	0	0	0	1	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	a0017	3058	1	0	0	1	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DNA2_chr10_68409064_68476973	1/1	a0001	1060	306	70	46	136	12	40	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	a0002	1060	9	8	1	0	0	0	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	a0003	1060	4	4	0	0	0	0	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	a0004	1060	2	2	0	0	0	0	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	a0005	40	1	0	0	0	0	1	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	a0006	1060	1	1	0	0	0	0	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	a0007	1060	1	0	1	0	0	0	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	a0008	1060	1	0	0	0	0	1	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	a0009	1060	1	1	0	0	0	0	copy fasta	DNA2	chr10	68409064	68476973
DNAAF10_chr2_68124805_68162527	1/1	a0001	357	344	75	71	152	10	34	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	a0002	357	84	18	14	40	4	8	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	a0003	357	3	0	1	0	0	2	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	a0004	357	1	1	0	0	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF11_chr8_132565416_132680545	1/0	a0001	466	117	7	17	68	8	16	copy fasta	DNAAF11	chr8	132565416	132680545
DNAAF11_chr8_132565416_132680545	0/1	a0002	466	108	49	21	24	2	11	copy fasta	DNAAF11	chr8	132565416	132680545
DNAAF11_chr8_132565416_132680545	0/0	a0003	466	42	21	6	6	4	5	copy fasta	DNAAF11	chr8	132565416	132680545
DNAAF11_chr8_132565416_132680545	0/0	a0004	466	4	0	0	4	0	0	copy fasta	DNAAF11	chr8	132565416	132680545
DNAAF11_chr8_132565416_132680545	0/0	a0005	466	2	0	0	2	0	0	copy fasta	DNAAF11	chr8	132565416	132680545
DNAAF11_chr8_132565416_132680545	0/0	a0006	466	1	1	0	0	0	0	copy fasta	DNAAF11	chr8	132565416	132680545
DNAAF11_chr8_132565416_132680545	0/0	a0007	466	1	1	0	0	0	0	copy fasta	DNAAF11	chr8	132565416	132680545
DNAAF11_chr8_132565416_132680545	0/0	a0008	466	1	1	0	0	0	0	copy fasta	DNAAF11	chr8	132565416	132680545
DNAAF1_chr16_84140308_84182918	1/0	a0001	725	162	47	18	77	5	14	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	a0002	725	97	3	21	55	5	13	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	a0003	725	36	4	4	20	0	8	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	a0004	725	36	1	19	10	1	5	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	a0005	725	19	11	5	0	0	3	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	a0006	725	18	0	7	11	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	a0007	725	17	5	3	6	3	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	a0008	725	8	0	0	8	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	a0009	725	7	6	1	0	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	a0010	725	7	0	0	7	0	0	copy fasta	DNAAF1	chr16	84140308	84182918