JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DNAAF1_chr16_84140308_84182918	0/0	a0011	725	5	0	4	0	0	1	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	a0012	725	5	5	0	0	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	a0013	725	3	3	0	0	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	a0014	725	3	0	0	2	0	1	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	a0015	725	3	0	0	3	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	a0016	725	3	3	0	0	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	a0017	725	2	0	0	2	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	a0018	725	2	0	2	0	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	a0019	725	2	0	0	0	2	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	a0020	725	2	2	0	0	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	a0021	725	2	0	0	2	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	a0022	725	2	0	2	0	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	a0023	725	2	1	0	1	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/1	a0024	725	2	0	0	0	0	1	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	a0025	725	1	1	0	0	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	a0026	725	1	1	0	0	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	a0027	725	1	0	0	0	0	1	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	a0028	725	1	0	0	1	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	a0029	725	1	0	0	0	0	1	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	a0030	725	1	1	0	0	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	a0031	725	1	0	1	0	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	a0032	725	1	0	0	1	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	a0033	725	1	0	0	1	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	a0034	725	1	0	0	1	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	a0035	725	1	0	1	0	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF2_chr14_49620174_49640244	1/0	a0001	837	187	45	23	97	7	14	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/1	a0002	837	94	17	30	22	7	17	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	a0003	837	52	30	15	1	3	3	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	a0004	837	4	0	0	4	0	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	a0005	837	2	2	0	0	0	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	a0006	837	2	2	0	0	0	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	a0007	837	1	0	0	0	1	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	a0008	837	1	0	0	0	0	1	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	a0009	837	1	1	0	0	0	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	a0010	837	1	0	1	0	0	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	a0011	837	1	0	0	0	0	1	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	a0012	837	1	1	0	0	0	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	a0013	837	1	0	0	1	0	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	a0014	837	1	0	0	1	0	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	a0015	837	1	0	0	1	0	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	a0016	837	1	0	0	1	0	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	a0017	837	1	0	1	0	0	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF3_chr19_55153665_55171613	1/1	a0001	541	239	32	45	109	14	37	copy fasta	DNAAF3	chr19	55153665	55171613
DNAAF3_chr19_55153665_55171613	0/0	a0002	541	74	48	10	9	0	7	copy fasta	DNAAF3	chr19	55153665	55171613
DNAAF3_chr19_55153665_55171613	0/0	a0003	541	73	7	23	39	0	4	copy fasta	DNAAF3	chr19	55153665	55171613
DNAAF3_chr19_55153665_55171613	0/0	a0004	541	4	4	0	0	0	0	copy fasta	DNAAF3	chr19	55153665	55171613
DNAAF3_chr19_55153665_55171613	0/0	a0005	541	2	0	0	0	0	2	copy fasta	DNAAF3	chr19	55153665	55171613
DNAAF3_chr19_55153665_55171613	0/0	a0006	541	1	1	0	0	0	0	copy fasta	DNAAF3	chr19	55153665	55171613
DNAAF3_chr19_55153665_55171613	0/0	a0007	541	1	1	0	0	0	0	copy fasta	DNAAF3	chr19	55153665	55171613
DNAAF3_chr19_55153665_55171613	0/0	a0008	541	1	0	0	1	0	0	copy fasta	DNAAF3	chr19	55153665	55171613