JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DNAAF3_chr19_55153665_55171613	0/0	a0009	541	1	0	0	1	0	0	copy fasta	DNAAF3	chr19	55153665	55171613
DNAAF3_chr19_55153665_55171613	0/0	a0010	541	1	0	0	1	0	0	copy fasta	DNAAF3	chr19	55153665	55171613
DNAAF3_chr19_55153665_55171613	0/0	a0011	541	1	1	0	0	0	0	copy fasta	DNAAF3	chr19	55153665	55171613
DNAAF4_chr15_55425308_55513234	0/0	a0001	420	146	20	34	65	9	18	copy fasta	DNAAF4	chr15	55425308	55513234
DNAAF4_chr15_55425308_55513234	1/1	a0002	420	70	21	17	15	3	12	copy fasta	DNAAF4	chr15	55425308	55513234
DNAAF4_chr15_55425308_55513234	0/0	a0003	420	58	6	5	41	0	6	copy fasta	DNAAF4	chr15	55425308	55513234
DNAAF4_chr15_55425308_55513234	0/0	a0004	416	27	15	4	2	1	5	copy fasta	DNAAF4	chr15	55425308	55513234
DNAAF4_chr15_55425308_55513234	0/0	a0005	416	26	24	2	0	0	0	copy fasta	DNAAF4	chr15	55425308	55513234
DNAAF4_chr15_55425308_55513234	0/0	a0006	420	8	3	1	0	1	3	copy fasta	DNAAF4	chr15	55425308	55513234
DNAAF4_chr15_55425308_55513234	0/0	a0007	420	1	1	0	0	0	0	copy fasta	DNAAF4	chr15	55425308	55513234
DNAAF4_chr15_55425308_55513234	0/0	a0008	420	1	0	1	0	0	0	copy fasta	DNAAF4	chr15	55425308	55513234
DNAAF4_chr15_55425308_55513234	0/0	a0009	420	1	0	0	1	0	0	copy fasta	DNAAF4	chr15	55425308	55513234
DNAAF5_chr7_721699_791475	1/1	a0001	855	152	27	27	75	6	15	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	a0002	855	106	31	22	36	5	12	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	a0003	855	100	29	20	32	1	18	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	a0004	855	6	0	0	6	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	a0005	855	2	2	0	0	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	a0006	855	1	0	0	1	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	a0007	855	1	0	1	0	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	a0008	855	1	0	1	0	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	a0009	855	1	0	1	0	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	a0010	855	1	0	0	1	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	a0011	855	1	1	0	0	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	a0012	855	1	1	0	0	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	a0013	855	1	1	0	0	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	a0014	855	1	0	0	0	0	1	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	a0015	855	1	0	0	1	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	a0016	855	1	0	0	1	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	a0017	855	1	0	0	1	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF6_chrX_107201611_107249247	1/1	a0001	214	295	74	43	143	5	28	copy fasta	DNAAF6	chrX	107201611	107249247
DNAAF6_chrX_107201611_107249247	0/0	a0002	70	1	0	0	1	0	0	copy fasta	DNAAF6	chrX	107201611	107249247
DNAAF8_chr16_4729537_4754396	1/1	a0001	520	136	52	20	47	2	13	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	a0002	520	125	3	31	61	12	18	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	a0003	520	42	0	12	30	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	a0004	520	24	18	2	4	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	a0005	520	16	1	0	7	1	7	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	a0006	520	7	1	3	3	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	a0007	520	6	6	0	0	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	a0008	520	6	0	0	6	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	a0009	520	4	0	0	4	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	a0010	520	3	2	1	0	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	a0011	520	3	3	0	0	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	a0012	520	2	0	2	0	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	a0013	520	2	0	1	0	0	1	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	a0014	520	2	2	0	0	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	a0015	520	1	0	0	1	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	a0016	520	1	0	1	0	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	a0017	520	1	0	1	0	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	a0018	520	1	0	0	0	1	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	a0019	520	1	0	0	1	0	0	copy fasta	DNAAF8	chr16	4729537	4754396