JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DNAAF8_chr16_4729537_4754396	0/0	a0020	520	1	0	0	0	0	1	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	a0021	520	1	0	1	0	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	a0022	520	1	0	1	0	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF9_chr20_3244306_3412669	0/1	a0001	1177	340	80	54	161	14	30	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	1/0	a0002	1177	12	4	5	0	1	1	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	a0003	1177	1	0	0	0	0	1	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	a0004	1177	1	1	0	0	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	a0005	1177	1	0	0	1	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	a0006	1177	1	0	0	1	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	a0007	1177	1	1	0	0	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	a0008	1177	1	0	1	0	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	a0009	1177	1	0	0	1	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	a0010	1177	1	0	0	1	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	a0011	1177	1	0	0	1	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	a0012	1177	1	0	0	0	1	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAH10_chr12_123757301_123940714	0/1	a0001	4589	34	9	8	9	1	6	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	a0002	4589	15	2	10	0	1	2	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	a0003	4589	10	1	1	3	0	5	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	a0004	4589	6	0	3	0	3	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	a0005	4589	6	6	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	a0006	4589	5	0	0	5	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	a0007	4589	4	4	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	a0008	4589	3	3	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	a0009	4589	3	3	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	a0010	4589	3	2	1	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	a0011	4589	3	3	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	a0012	4589	2	2	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	a0013	4589	2	2	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	a0014	4589	2	2	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	a0015	4589	2	2	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	a0016	4589	2	2	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	a0017	4589	2	0	0	0	0	2	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	a0018	4589	2	0	0	0	0	2	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	a0019	4589	2	0	2	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	a0020	4589	2	2	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	1/0	a0021	4589	2	0	0	0	0	1	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	a0022	4589	2	0	0	0	0	2	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	a0023	4589	2	0	0	0	0	2	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	a0024	4589	2	2	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	a0025	4589	2	1	1	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	a0026	4589	2	2	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	a0027	4589	2	2	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	a0028	4589	1	0	0	0	0	1	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	a0029	4589	1	0	1	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	a0030	4589	1	1	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	a0031	4589	1	1	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	a0032	4589	1	1	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	a0033	4589	1	1	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	a0034	4589	1	0	1	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	a0035	4589	1	0	0	1	0	0	copy fasta	DNAH10	chr12	123757301	123940714