Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ABCA13_chr7_48166458_48652497	0/0	a0002	5058	8	2	3	3	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0003	5058	8	0	4	3	0	1	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/1	a0004	5058	7	0	3	1	1	1	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0005	5058	6	2	0	4	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0006	5058	6	1	0	5	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0007	5058	5	2	1	2	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0008	5058	5	0	0	1	1	3	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0009	5058	4	1	0	3	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0010	5058	4	0	2	2	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0011	5058	4	1	2	1	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0012	5058	4	0	1	1	1	1	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0013	3462	3	3	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0014	5058	3	3	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0015	5058	3	3	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0016	5058	2	0	1	0	1	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0017	5058	2	0	0	2	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0018	5058	2	0	0	2	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0019	5058	2	0	0	2	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0020	5058	2	0	1	1	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0021	5058	2	0	0	2	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0022	5058	2	1	1	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0023	5058	2	0	1	1	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0024	5058	2	2	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0025	5058	2	2	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0026	5058	2	0	1	0	1	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0027	5058	2	2	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0028	5058	2	2	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0029	5058	2	2	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0030	5058	1	0	1	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0031	5058	1	0	1	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0032	5058	1	0	0	1	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0033	5058	1	0	0	0	1	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0034	5058	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0035	5058	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0036	5058	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0037	5058	1	0	0	1	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0038	5058	1	0	0	1	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0039	5058	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0040	5058	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0041	5058	1	0	0	1	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0042	5058	1	0	0	1	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0043	5058	1	0	1	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0044	5058	1	0	0	1	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0045	5058	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0046	5058	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0047	5058	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0048	5058	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0049	5058	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0050	5058	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	a0051	5058	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497