Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ADGRE2_chr19_14727392_14783560	0/0	a0015	823	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	a0016	823	1	0	1	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	a0017	823	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	a0018	823	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	a0019	823	1	0	0	1	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	a0020	823	1	0	0	0	0	1	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	a0021	823	1	0	1	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	a0022	823	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	a0023	823	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	a0024	823	1	0	1	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	a0025	823	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	1/0	a0026	823	1	0	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	a0027	823	1	0	0	1	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	a0028	823	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	a0029	123	1	0	0	1	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE3_chr19_14614117_14679844	0/0	a0001	652	161	36	30	70	5	20	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	a0002	652	75	16	14	29	5	11	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/1	a0003	652	58	2	19	24	2	10	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	a0004	652	32	8	6	15	0	3	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	a0005	652	8	8	0	0	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	a0006	652	7	0	0	7	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	a0007	652	6	6	0	0	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	a0008	652	5	5	0	0	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	a0009	652	2	0	1	0	1	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	a0010	652	2	0	0	0	2	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	a0011	652	2	0	0	2	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	a0012	652	2	2	0	0	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	a0013	652	1	1	0	0	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	a0014	652	1	0	0	1	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	a0015	652	1	1	0	0	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	a0016	652	1	1	0	0	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	1/0	a0017	652	1	0	0	0	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	a0018	652	1	0	0	1	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	a0019	652	1	1	0	0	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	a0020	652	1	0	0	1	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	a0021	652	1	1	0	0	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	a0022	652	1	1	0	0	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	a0023	652	1	1	0	0	0	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE3_chr19_14614117_14679844	0/0	a0024	652	1	0	0	0	1	0	copy fasta	ADGRE3	chr19	14614117	14679844
ADGRE5_chr19_14376444_14413723	1/1	a0001	835	247	72	52	81	12	28	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	a0002	835	82	5	7	54	2	14	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	a0003	835	20	3	12	3	1	1	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	a0004	835	4	4	0	0	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	a0005	835	4	4	0	0	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	a0006	835	2	0	0	2	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	a0007	835	2	2	0	0	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	a0008	835	2	0	2	0	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	a0009	835	1	0	0	0	0	1	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	a0010	835	1	0	1	0	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	a0011	311	1	0	1	0	0	0	copy fasta	ADGRE5	chr19	14376444	14413723