JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DNAH11_chr7_21538039_21906839	0/0	a0013	4516	3	0	0	2	0	1	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0014	4516	3	0	0	2	1	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0015	4516	3	0	0	3	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0016	4516	3	0	0	3	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0017	4516	3	0	1	2	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0018	4516	3	0	0	3	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0019	4516	2	0	0	0	2	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0020	4516	2	0	0	0	0	2	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0021	4516	2	0	2	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0022	4516	2	0	2	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0023	4516	2	0	2	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0024	4516	2	0	0	2	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0025	4516	2	0	0	2	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0026	4516	2	0	0	1	0	1	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0027	4516	2	0	0	2	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0028	4516	2	0	0	2	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0029	4516	2	0	0	2	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0030	4516	2	2	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0031	4516	2	1	1	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0032	4516	2	0	1	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0033	4516	2	0	0	1	0	1	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0034	4516	2	0	0	2	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0035	4516	2	0	0	2	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0036	4516	2	0	0	1	0	1	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0037	4516	2	0	0	2	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0038	4516	2	2	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0039	4516	2	0	0	2	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0040	4516	2	2	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0041	4516	2	0	0	2	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0042	4516	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0043	4516	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0044	4516	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0045	4516	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0046	4516	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0047	4516	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0048	4516	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0049	4516	1	0	0	0	0	1	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0050	4516	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0051	4516	1	0	1	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0052	4516	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0053	4516	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0054	4516	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0055	4516	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0056	4516	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0057	4516	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0058	4516	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0059	4516	1	0	1	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0060	4516	1	0	0	0	1	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0061	4516	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0062	4516	1	0	1	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839